KEGG   PATHWAY: ftt00020
Entry
ftt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella tularensis subsp. tularensis TI0902
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ftt00020  Citrate cycle (TCA cycle)
ftt00020

Module
ftt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ftt00020]
ftt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ftt00020]
ftt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ftt00020]
ftt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ftt00020]
ftt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ftt00020]
Other DBs
GO: 0006099
Organism
Francisella tularensis subsp. tularensis TI0902 [GN:ftt]
Gene
FTV_0067  gltA; Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
FTV_0083  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FTV_1456  idh; Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
FTV_0072  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FTV_0073  sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
FTV_1414  lpd; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
FTV_0469  sucD; Succinyl-CoA ligase (ADP-forming) alpha chain [KO:K01902] [EC:6.2.1.5]
FTV_0470  sucC; Succinyl-CoA ligase (ADP-forming) beta chain [KO:K01903] [EC:6.2.1.5]
FTV_0070  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FTV_0071  sdhB; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
FTV_0068  sdhC; Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
FTV_0069  sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
FTV_1523  fumA; Fumarate hydratase class I aerobic [KO:K01676] [EC:4.2.1.2]
FTV_0285  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
FTV_0498  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FTV_0416  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FTV_1416  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
FTV_1415  aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ftt00010  Glycolysis / Gluconeogenesis
ftt00061  Fatty acid biosynthesis
ftt00071  Fatty acid degradation
ftt00190  Oxidative phosphorylation
ftt00220  Arginine biosynthesis
ftt00250  Alanine, aspartate and glutamate metabolism
ftt00280  Valine, leucine and isoleucine degradation
ftt00470  D-Amino acid metabolism
ftt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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