KEGG   PATHWAY: ftx00020
Entry
ftx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella tularensis subsp. novicida U112
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ftx00020  Citrate cycle (TCA cycle)
ftx00020

Module
ftx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ftx00020]
ftx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ftx00020]
ftx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ftx00020]
ftx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ftx00020]
ftx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ftx00020]
Other DBs
GO: 0006099
Organism
Francisella tularensis subsp. novicida U112 [GN:ftx]
Gene
AW25_349  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AW25_366  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AW25_567  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
AW25_354  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
AW25_355  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AW25_509  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AW25_1435  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AW25_1434  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
AW25_352  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AW25_353  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
AW25_350  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
AW25_351  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
AW25_1703  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
AW25_1824  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AW25_1032  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
AW25_1489  phosphoenolpyruvate carboxykinase family protein [KO:K01610] [EC:4.1.1.49]
AW25_507  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AW25_508  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ftx00010  Glycolysis / Gluconeogenesis
ftx00061  Fatty acid biosynthesis
ftx00071  Fatty acid degradation
ftx00190  Oxidative phosphorylation
ftx00220  Arginine biosynthesis
ftx00250  Alanine, aspartate and glutamate metabolism
ftx00280  Valine, leucine and isoleucine degradation
ftx00350  Tyrosine metabolism
ftx00470  D-Amino acid metabolism
ftx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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