KEGG   PATHWAY: gat00030
Entry
gat00030                    Pathway                                
Name
Pentose phosphate pathway - Gasterosteus aculeatus (three-spined stickleback)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gat00030  Pentose phosphate pathway
gat00030

Module
gat_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:gat00030]
gat_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:gat00030]
gat_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:gat00030]
gat_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:gat00030]
Other DBs
GO: 0006098
Organism
Gasterosteus aculeatus (three-spined stickleback) [GN:gat]
Gene
120809619  gpia; glucose-6-phosphate isomerase a [KO:K01810] [EC:5.3.1.9]
120811047  gpib; glucose-6-phosphate isomerase b [KO:K01810] [EC:5.3.1.9]
120829555  g6pd; glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
120829099  glucose-6-phosphate 1-dehydrogenase-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
120827191  pgls; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
120834651  h6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
120829814  pgd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
120834445  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
120835810  transketolase-like [KO:K00615] [EC:2.2.1.1]
120829874  transketolase-like [KO:K00615] [EC:2.2.1.1]
120829061  tktb; transketolase-like protein 2 [KO:K00615] [EC:2.2.1.1]
120831277  taldo1; transaldolase [KO:K00616] [EC:2.2.1.2]
120832490  rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
120821513  shpk; sedoheptulokinase isoform X1 [KO:K11214] [EC:2.7.1.14]
120817864  dera; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
120832628  rbks; ribokinase isoform X1 [KO:K00852] [EC:2.7.1.15]
120815966  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
120823827  pgm1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
120825605  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
120816212  ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
120818366  prps1b; ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
120829264  rgn; regucalcin isoform X1 [KO:K01053] [EC:3.1.1.17]
120830713  probable gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
120835607  glyctk; glycerate kinase [KO:K11529] [EC:2.7.1.165]
120817094  aldob; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
120819114  aldoab; aldolase a, fructose-bisphosphate, b isoform X1 [KO:K01623] [EC:4.1.2.13]
120821372  aldocb; fructose-bisphosphate aldolase C-B [KO:K01623] [EC:4.1.2.13]
120827748  aldoca; fructose-bisphosphate aldolase C-A [KO:K01623] [EC:4.1.2.13]
120828253  fructose-bisphosphate aldolase A-like [KO:K01623] [EC:4.1.2.13]
120832018  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
120830269  fbp2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
120830274  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
120835750  pfkmb; phosphofructokinase, muscle b [KO:K00850] [EC:2.7.1.11]
120834200  pfkla; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
120829414  ATP-dependent 6-phosphofructokinase, muscle type-like [KO:K00850] [EC:2.7.1.11]
120811533  pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
120815560  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
gat00010  Glycolysis / Gluconeogenesis
gat00040  Pentose and glucuronate interconversions
gat00052  Galactose metabolism
gat00230  Purine metabolism
gat00240  Pyrimidine metabolism
gat00340  Histidine metabolism
gat00630  Glyoxylate and dicarboxylate metabolism
gat00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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