KEGG   PATHWAY: ger00010
Entry
ger00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Geomonas oryzisoli
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ger00010  Glycolysis / Gluconeogenesis
ger00010

Module
ger_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:ger00010]
ger_M00002  Glycolysis, core module involving three-carbon compounds [PATH:ger00010]
ger_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ger00010]
ger_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ger00010]
Other DBs
GO: 0006096 0006094
Organism
Geomonas oryzisoli [GN:ger]
Gene
KP004_08920  glk; glucokinase [KO:K00845] [EC:2.7.1.2]
KP004_13425  ROK family protein [KO:K25026] [EC:2.7.1.2]
KP004_16375  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
KP004_08505  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
KP004_05470  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
KP004_06585  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
KP004_11020  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
KP004_15200  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
KP004_10650  tpiA; triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
KP004_10640  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
KP004_18105  glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
KP004_10645  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
KP004_16870  gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
KP004_18040  gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
KP004_11280  cofactor-independent phosphoglycerate mutase [KO:K15635] [EC:5.4.2.12]
KP004_15255  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
KP004_04425  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
KP004_02500  ppdK; pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
KP004_01500  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KP004_10245  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KP004_01505  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
KP004_10225  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
KP004_01510  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
KP004_10220  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
KP004_02825  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KP004_04360  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
KP004_19435  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
KP004_20615  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
KP004_05160  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KP004_06250  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KP004_05165  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KP004_06255  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KP004_13290  iron-containing alcohol dehydrogenase [KO:K13954] [EC:1.1.1.1]
KP004_01160  NAD(P)-dependent alcohol dehydrogenase [KO:K13979] [EC:1.1.1.2]
KP004_11660  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
KP004_02955  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KP004_02950  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ger00020  Citrate cycle (TCA cycle)
ger00030  Pentose phosphate pathway
ger00500  Starch and sucrose metabolism
ger00620  Pyruvate metabolism
ger00640  Propanoate metabolism
ger00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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