KEGG   PATHWAY: gho00020
Entry
gho00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Grimontia hollisae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gho00020  Citrate cycle (TCA cycle)
gho00020

Module
gho_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gho00020]
gho_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gho00020]
gho_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gho00020]
gho_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gho00020]
gho_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gho00020]
Other DBs
GO: 0006099
Organism
Grimontia hollisae [GN:gho]
Gene
AL542_04480  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AL542_07340  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AL542_14515  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AL542_04455  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AL542_04450  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
AL542_07350  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AL542_08420  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AL542_04440  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AL542_04445  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AL542_04465  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AL542_04460  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AL542_04475  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
AL542_04470  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
AL542_11110  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
AL542_11105  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
AL542_11100  fumarate reductase subunit FrdC [KO:K00246]
AL542_11095  fumarate reductase subunit FrdD [KO:K00247]
AL542_15910  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AL542_02710  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AL542_11605  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AL542_10290  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AL542_07360  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AL542_07355  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
AL542_16435  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gho00010  Glycolysis / Gluconeogenesis
gho00053  Ascorbate and aldarate metabolism
gho00061  Fatty acid biosynthesis
gho00071  Fatty acid degradation
gho00190  Oxidative phosphorylation
gho00220  Arginine biosynthesis
gho00250  Alanine, aspartate and glutamate metabolism
gho00280  Valine, leucine and isoleucine degradation
gho00350  Tyrosine metabolism
gho00470  D-Amino acid metabolism
gho00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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