KEGG   PATHWAY: gle00020
Entry
gle00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Glaesserella sp. 15-184
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gle00020  Citrate cycle (TCA cycle)
gle00020

Module
gle_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gle00020]
gle_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gle00020]
gle_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gle00020]
Other DBs
GO: 0006099
Organism
Glaesserella sp. 15-184 [GN:gle]
Gene
CJD39_02670  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CJD39_02665  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CJD39_03390  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CJD39_02655  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CJD39_02660  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CJD39_07785  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CJD39_07780  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
CJD39_07775  fumarate reductase subunit FrdC [KO:K00246]
CJD39_07770  fumarate reductase subunit FrdD [KO:K00247]
CJD39_09430  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CJD39_06015  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CJD39_02450  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CJD39_03380  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CJD39_03385  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gle00010  Glycolysis / Gluconeogenesis
gle00053  Ascorbate and aldarate metabolism
gle00061  Fatty acid biosynthesis
gle00071  Fatty acid degradation
gle00190  Oxidative phosphorylation
gle00220  Arginine biosynthesis
gle00250  Alanine, aspartate and glutamate metabolism
gle00280  Valine, leucine and isoleucine degradation
gle00350  Tyrosine metabolism
gle00470  D-Amino acid metabolism
gle00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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