KEGG   PATHWAY: gmr00020
Entry
gmr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gimesia maris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gmr00020  Citrate cycle (TCA cycle)
gmr00020

Module
gmr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gmr00020]
gmr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gmr00020]
gmr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gmr00020]
gmr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gmr00020]
Other DBs
GO: 0006099
Organism
Gimesia maris [GN:gmr]
Gene
GmarT_47620  citZ_1; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
GmarT_12210  acn; Aconitate hydratase precursor [KO:K01681] [EC:4.2.1.3]
GmarT_60040  icd; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
GmarT_39520  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GmarT_44900  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
GmarT_36470  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GmarT_44910  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GmarT_53710  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GmarT_53700  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GmarT_13300  sucD_1; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
GmarT_13290  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
GmarT_12680  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GmarT_12690  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GmarT_12670  hypothetical protein [KO:K00241]
GmarT_02350  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
GmarT_36500  mdh_2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GmarT_47210  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
GmarT_20670  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
GmarT_36450  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
GmarT_36460  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gmr00010  Glycolysis / Gluconeogenesis
gmr00053  Ascorbate and aldarate metabolism
gmr00061  Fatty acid biosynthesis
gmr00071  Fatty acid degradation
gmr00190  Oxidative phosphorylation
gmr00220  Arginine biosynthesis
gmr00250  Alanine, aspartate and glutamate metabolism
gmr00280  Valine, leucine and isoleucine degradation
gmr00350  Tyrosine metabolism
gmr00470  D-Amino acid metabolism
gmr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system