KEGG   PATHWAY: gmu00030
Entry
gmu00030                    Pathway                                
Name
Pentose phosphate pathway - Girardinichthys multiradiatus (darkedged splitfin)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gmu00030  Pentose phosphate pathway
gmu00030

Module
gmu_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:gmu00030]
gmu_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:gmu00030]
gmu_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:gmu00030]
gmu_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:gmu00030]
Other DBs
GO: 0006098
Organism
Girardinichthys multiradiatus (darkedged splitfin) [GN:gmu]
Gene
124857811  gpia; glucose-6-phosphate isomerase a [KO:K01810] [EC:5.3.1.9]
124866927  gpib; glucose-6-phosphate isomerase b [KO:K01810] [EC:5.3.1.9]
124869781  glucose-6-phosphate 1-dehydrogenase-like isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
124867562  glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
124862905  6-phosphogluconolactonase-like [KO:K01057] [EC:3.1.1.31]
124864641  6-phosphogluconolactonase-like isoform X1 [KO:K01057] [EC:3.1.1.31]
124857025  h6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
124867947  pgd; 6-phosphogluconate dehydrogenase, decarboxylating isoform X1 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
124870959  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
124869664  tktb; transketolase-like protein 2 [KO:K00615] [EC:2.2.1.1]
124856409  tkta; transketolase [KO:K00615] [EC:2.2.1.1]
124866480  transketolase-like [KO:K00615] [EC:2.2.1.1]
124866521  taldo1; transaldolase [KO:K00616] [EC:2.2.1.2]
124884885  rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
124876156  shpk; sedoheptulokinase isoform X1 [KO:K11214] [EC:2.7.1.14]
124883310  dera; deoxyribose-phosphate aldolase isoform X1 [KO:K01619] [EC:4.1.2.4]
124855331  rbks; ribokinase [KO:K00852] [EC:2.7.1.15]
124869570  phosphoglucomutase-1-like isoform X1 [KO:K01835] [EC:5.4.2.2]
124874389  pgm1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
124869028  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
124859805  prps1b; ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
124861610  ribose-phosphate pyrophosphokinase 2 isoform X1 [KO:K00948] [EC:2.7.6.1]
124861380  rgn; regucalcin [KO:K01053] [EC:3.1.1.17]
124878450  probable gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
124856523  glyctk; glycerate kinase [KO:K11529] [EC:2.7.1.165]
124876215  aldocb; fructose-bisphosphate aldolase C-B [KO:K01623] [EC:4.1.2.13]
124884181  aldoca; fructose-bisphosphate aldolase C-A [KO:K01623] [EC:4.1.2.13]
124860470  aldob; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
124874806  aldoab; aldolase a, fructose-bisphosphate, b [KO:K01623] [EC:4.1.2.13]
124878021  fbp1a; fructose-1,6-bisphosphatase 1a [KO:K03841] [EC:3.1.3.11]
124878150  fbp2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
124872733  fbp1b; fructose-1,6-bisphosphatase 1b [KO:K03841] [EC:3.1.3.11]
124856663  pfkmb; phosphofructokinase, muscle b isoform X1 [KO:K00850] [EC:2.7.1.11]
124871365  pfkla; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
124857915  pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
124869273  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
124875876  pfkma; phosphofructokinase, muscle a [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
gmu00010  Glycolysis / Gluconeogenesis
gmu00040  Pentose and glucuronate interconversions
gmu00052  Galactose metabolism
gmu00230  Purine metabolism
gmu00240  Pyrimidine metabolism
gmu00340  Histidine metabolism
gmu00630  Glyoxylate and dicarboxylate metabolism
gmu00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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