KEGG   PATHWAY: grs00020
Entry
grs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Christiangramia fulva
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
grs00020  Citrate cycle (TCA cycle)
grs00020

Module
grs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:grs00020]
grs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:grs00020]
grs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:grs00020]
grs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:grs00020]
grs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:grs00020]
Other DBs
GO: 0006099
Organism
Christiangramia fulva [GN:grs]
Gene
C7S20_01950  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C7S20_14425  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C7S20_18900  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C7S20_00655  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C7S20_06945  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C7S20_06950  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
C7S20_11635  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
C7S20_03395  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7S20_18100  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7S20_16430  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7S20_03470  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
C7S20_03475  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
C7S20_13500  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C7S20_11905  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C7S20_06660  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C7S20_06655  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C7S20_06665  succinate dehydrogenase [KO:K00241]
C7S20_13320  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C7S20_01690  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C7S20_11155  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
C7S20_08070  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
C7S20_03385  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C7S20_02335  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
C7S20_09380  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
C7S20_03390  dihydrolipoyllysine acetyltransferase [KO:K00627] [EC:2.3.1.12]
C7S20_02330  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
C7S20_03460  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
grs00010  Glycolysis / Gluconeogenesis
grs00053  Ascorbate and aldarate metabolism
grs00061  Fatty acid biosynthesis
grs00071  Fatty acid degradation
grs00190  Oxidative phosphorylation
grs00220  Arginine biosynthesis
grs00250  Alanine, aspartate and glutamate metabolism
grs00280  Valine, leucine and isoleucine degradation
grs00350  Tyrosine metabolism
grs00470  D-Amino acid metabolism
grs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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