KEGG   PATHWAY: gsj00730
Entry
gsj00730                    Pathway                                
Name
Thiamine metabolism - Glycine soja (wild soybean)
Class
Metabolism; Metabolism of cofactors and vitamins
Pathway map
gsj00730  Thiamine metabolism
gsj00730

Module
gsj_M00897  Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP [PATH:gsj00730]
gsj_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:gsj00730]
Other DBs
GO: 0006772
Organism
Glycine soja (wild soybean) [GN:gsj]
Gene
114395392  phosphomethylpyrimidine synthase, chloroplastic [KO:K03147] [EC:4.1.99.17]
114372877  phosphomethylpyrimidine synthase, chloroplastic-like [KO:K03147] [EC:4.1.99.17]
114422268  thiamine biosynthetic bifunctional enzyme TH1, chloroplastic-like [KO:K14153] [EC:2.7.1.49 2.7.4.7 2.5.1.3]
114380012  thiamine biosynthetic bifunctional enzyme TH1, chloroplastic-like [KO:K14153] [EC:2.7.1.49 2.7.4.7 2.5.1.3]
114422658  cysteine desulfurase, mitochondrial-like [KO:K04487] [EC:2.8.1.7]
114373846  cysteine desulfurase, mitochondrial-like [KO:K04487] [EC:2.8.1.7]
114423048  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
114423050  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
114415010  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
114395590  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
114420091  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
114408993  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
114377030  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
114366944  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
114392300  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
114392810  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
114387484  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
114417056  thiamine thiazole synthase 1, chloroplastic-like [KO:K03146] [EC:2.4.2.60]
114403613  thiamine thiazole synthase 2, chloroplastic-like [KO:K03146] [EC:2.4.2.60]
114404912  thiamine thiazole synthase, chloroplastic-like [KO:K03146] [EC:2.4.2.60]
114372051  thiamine thiazole synthase 2, chloroplastic-like [KO:K03146] [EC:2.4.2.60]
114380540  thiamine thiazole synthase, chloroplastic-like [KO:K03146] [EC:2.4.2.60]
114372313  hydroxyethylthiazole kinase-like isoform X1 [KO:K00878] [EC:2.7.1.50]
114419188  cancer-related nucleoside-triphosphatase isoform X1 [KO:K06928] [EC:3.6.1.15]
114397554  small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial-like [KO:K06949] [EC:3.6.1.- 3.1.3.100]
114382196  small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial-like isoform X1 [KO:K06949] [EC:3.6.1.- 3.1.3.100]
114371168  bifunctional TH2 protein, mitochondrial-like [KO:K22911] [EC:3.1.3.100 3.5.99.-]
114403312  bifunctional TH2 protein, mitochondrial-like isoform X1 [KO:K22911] [EC:3.1.3.100 3.5.99.-]
114399903  thiamine pyrophosphokinase 2-like [KO:K00949] [EC:2.7.6.2]
114407361  thiamine pyrophosphokinase 2-like [KO:K00949] [EC:2.7.6.2]
114407045  adenylate kinase 1, chloroplastic-like [KO:K00939] [EC:2.7.4.3]
114412042  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
114399974  adenylate kinase 1, chloroplastic-like [KO:K00939] [EC:2.7.4.3]
114412043  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
114398946  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
114425074  adenylate kinase, chloroplastic-like [KO:K00939] [EC:2.7.4.3]
114380726  probable adenylate kinase 1, chloroplastic [KO:K00939] [EC:2.7.4.3]
114372557  probable adenylate kinase 1, chloroplastic [KO:K00939] [EC:2.7.4.3]
114392464  adenylate kinase 4-like [KO:K00939] [EC:2.7.4.3]
114367857  adenylate kinase 5, chloroplastic-like isoform X1 [KO:K00939] [EC:2.7.4.3]
114391007  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
114388177  adenylate kinase 5, chloroplastic-like isoform X1 [KO:K00939] [EC:2.7.4.3]
114392369  probable bifunctional TENA-E protein [KO:K20896] [EC:3.5.1.- 3.5.99.-]
Compound
C00003  NAD+
C00018  Pyridoxal phosphate
C00022  Pyruvate
C00037  Glycine
C00068  Thiamin diphosphate
C00082  L-Tyrosine
C00097  L-Cysteine
C00118  D-Glyceraldehyde 3-phosphate
C00378  Thiamine
C01081  Thiamin monophosphate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C02892  Thiamine acetic acid
C03028  Thiamin triphosphate
C03373  Aminoimidazole ribotide
C04294  5-(2-Hydroxyethyl)-4-methylthiazole
C04327  4-Methyl-5-(2-phosphooxyethyl)thiazole
C04556  4-Amino-2-methyl-5-(phosphooxymethyl)pyrimidine
C04752  4-Amino-5-hydroxymethyl-2-methylpyrimidine diphosphate
C05856  Thiamine aldehyde
C11437  1-Deoxy-D-xylulose 5-phosphate
C15809  Iminoglycine
C15810  Sulfur-carrier protein
C15811  [Enzyme]-cysteine
C15812  [Enzyme]-S-sulfanylcysteine
C15813  Adenylyl-[sulfur-carrier protein]
C15814  Thiocarboxy-[sulfur-carrier protein]
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20246  2-[(2R,5Z)-2-Carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
C20247  2-(2-Carboxy-4-methylthiazol-5-yl)ethyl phosphate
C20267  4-Amino-5-aminomethyl-2-methylpyrimidine
C20784  ADP-5-ethyl-4-methylthiazole-2-carboxylate
Reference
PMID:15614489
  Authors
Kawasaki Y, Onozuka M, Mizote T, Nosaka K.
  Title
Biosynthesis of hydroxymethylpyrimidine pyrophosphate in Saccharomyces cerevisiae.
  Journal
Curr Genet 47:156-62 (2005)
DOI:10.1007/s00294-004-0557-x
Reference
PMID:14567704
  Authors
Park JH, Dorrestein PC, Zhai H, Kinsland C, McLafferty FW, Begley TP.
  Title
Biosynthesis of the thiazole moiety of thiamin pyrophosphate (vitamin B1).
  Journal
Biochemistry 42:12430-8 (2003)
DOI:10.1021/bi034902z
Reference
PMID:22616866
  Authors
Begley TP, Ealick SE, McLafferty FW
  Title
Thiamin biosynthesis: still yielding fascinating biological chemistry.
  Journal
Biochem Soc Trans 40:555-60 (2012)
DOI:10.1042/BST20120084
Reference
PMID:12777485
  Authors
Wightman R, Meacock PA
  Title
The THI5 gene family of Saccharomyces cerevisiae: distribution of homologues among the hemiascomycetes and functional redundancy in the aerobic biosynthesis of thiamin from pyridoxine.
  Journal
Microbiology 149:1447-60 (2003)
DOI:10.1099/mic.0.26194-0
Reference
PMID:22031445
  Authors
Chatterjee A, Abeydeera ND, Bale S, Pai PJ, Dorrestein PC, Russell DH, Ealick SE, Begley TP
  Title
Saccharomyces cerevisiae THI4p is a suicide thiamine thiazole synthase.
  Journal
Nature 478:542-6 (2011)
DOI:10.1038/nature10503
Reference
PMID:19348578
  Authors
Jurgenson CT, Begley TP, Ealick SE
  Title
The structural and biochemical foundations of thiamin biosynthesis.
  Journal
Annu Rev Biochem 78:569-603 (2009)
DOI:10.1146/annurev.biochem.78.072407.102340
Related
pathway
gsj00010  Glycolysis / Gluconeogenesis
gsj00230  Purine metabolism
gsj00260  Glycine, serine and threonine metabolism
gsj00270  Cysteine and methionine metabolism
gsj00400  Phenylalanine, tyrosine and tryptophan biosynthesis
gsj00750  Vitamin B6 metabolism
KO pathway
ko00730   
LinkDB

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