KEGG   PATHWAY: gsl00020
Entry
gsl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Galdieria sulphuraria
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gsl00020  Citrate cycle (TCA cycle)
gsl00020

Module
gsl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gsl00020]
gsl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gsl00020]
Other DBs
GO: 0006099
Organism
Galdieria sulphuraria [GN:gsl]
Gene
Gasu_62510  citrate synthase (mitochondrial) [KO:K01647] [EC:2.3.3.1]
Gasu_29750  citrate synthase (mitochondrial) [KO:K01647] [EC:2.3.3.1]
Gasu_54100  citrate synthase [KO:K01647] [EC:2.3.3.1]
Gasu_49600  citrate synthase [KO:K01647] [EC:2.3.3.1]
Gasu_20130  citrate synthase [KO:K01647] [EC:2.3.3.1]
Gasu_13530  ATP citrate (pro-S)-lyase [KO:K01648] [EC:2.3.3.8]
Gasu_13540  ATP citrate (pro-S)-lyase [KO:K01648] [EC:2.3.3.8]
Gasu_24420  aconitate hydratase 1 isoform 1 [KO:K01681] [EC:4.2.1.3]
Gasu_16070  isocitrate dehydrogenase, NADP dependent [KO:K00031] [EC:1.1.1.42]
Gasu_48810  isocitrate dehydrogenase (NAD+) [KO:K00030] [EC:1.1.1.41]
Gasu_55090  isocitrate dehydrogenase (NAD+) [KO:K00030] [EC:1.1.1.41]
Gasu_23210  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Gasu_10700  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Gasu_32380  2-oxoglutarate dehydrogenase E2 component (dihydrolipoamidesuccinyltransferase) [KO:K00658] [EC:2.3.1.61]
Gasu_58060  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gasu_15110  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gasu_11120  succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
Gasu_22120  succinyl-CoA synthetase beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
Gasu_13120  succinate dehydrogenase (ubiquinone) flavoprotein subunit isoform 1 [KO:K00234] [EC:1.3.5.1]
Gasu_00620  fumarate hydratase, class II isoform 1 [KO:K01679] [EC:4.2.1.2]
Gasu_34250  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
Gasu_00540  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
Gasu_29530  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Gasu_46140  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
Gasu_40510  [pt] pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JL72_p112  odpA; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
Gasu_14450  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
Gasu_33530  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Gasu_57350  pyruvate dehydrogenase E2 component (dihydrolipoamideacetyltransferase) isoform 1 [KO:K00627] [EC:2.3.1.12]
Gasu_17610  pyruvate dehydrogenase E2 component (dihydrolipoamideacetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gsl00010  Glycolysis / Gluconeogenesis
gsl00053  Ascorbate and aldarate metabolism
gsl00061  Fatty acid biosynthesis
gsl00062  Fatty acid elongation
gsl00071  Fatty acid degradation
gsl00190  Oxidative phosphorylation
gsl00220  Arginine biosynthesis
gsl00250  Alanine, aspartate and glutamate metabolism
gsl00280  Valine, leucine and isoleucine degradation
gsl00350  Tyrosine metabolism
gsl00470  D-Amino acid metabolism
gsl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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