KEGG   PATHWAY: gss00020
Entry
gss00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gallibacterium salpingitidis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gss00020  Citrate cycle (TCA cycle)
gss00020

Module
gss_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gss00020]
gss_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gss00020]
gss_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gss00020]
gss_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gss00020]
gss_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gss00020]
Other DBs
GO: 0006099
Organism
Gallibacterium salpingitidis [GN:gss]
Gene
NYR30_03430  citrate synthase [KO:K01647] [EC:2.3.3.1]
NYR30_02370  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NYR30_09005  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NYR30_03710  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NYR30_03435  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NYR30_03440  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NYR30_03835  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NYR30_03450  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NYR30_03445  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NYR30_02030  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
NYR30_02035  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
NYR30_02040  frdC; fumarate reductase subunit FrdC [KO:K00246]
NYR30_02045  frdD; fumarate reductase subunit FrdD [KO:K00247]
NYR30_05995  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NYR30_06565  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NYR30_11145  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NYR30_03825  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
NYR30_03830  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gss00010  Glycolysis / Gluconeogenesis
gss00053  Ascorbate and aldarate metabolism
gss00061  Fatty acid biosynthesis
gss00071  Fatty acid degradation
gss00190  Oxidative phosphorylation
gss00220  Arginine biosynthesis
gss00250  Alanine, aspartate and glutamate metabolism
gss00280  Valine, leucine and isoleucine degradation
gss00350  Tyrosine metabolism
gss00470  D-Amino acid metabolism
gss00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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