KEGG   PATHWAY: hak00020
Entry
hak00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halomonas sp. KO116
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hak00020  Citrate cycle (TCA cycle)
hak00020

Module
hak_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hak00020]
hak_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hak00020]
hak_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hak00020]
hak_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hak00020]
Other DBs
GO: 0006099
Organism
Halomonas sp. KO116 [GN:hak]
Gene
KO116_03171  citrate synthase I [KO:K01647] [EC:2.3.3.1]
KO116_00074  Citrate synthase [KO:K01647] [EC:2.3.3.1]
KO116_01429  aconitate hydratase domain-containing protein [KO:K01681] [EC:4.2.1.3]
KO116_00916  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
KO116_02038  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KO116_03105  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
KO116_01227  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
KO116_03166  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
KO116_03165  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
KO116_03164  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KO116_02189  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KO116_03162  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
KO116_03163  Succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
KO116_03168  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KO116_03167  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
KO116_03170  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KO116_03169  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KO116_00677  fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
KO116_00678  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
KO116_00679  fumarate reductase subunit C [KO:K00246]
KO116_00680  fumarate reductase D subunit [KO:K00247]
KO116_02274  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
KO116_02009  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
KO116_00954  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KO116_02976  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KO116_01080  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
KO116_01081  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hak00010  Glycolysis / Gluconeogenesis
hak00053  Ascorbate and aldarate metabolism
hak00061  Fatty acid biosynthesis
hak00071  Fatty acid degradation
hak00190  Oxidative phosphorylation
hak00220  Arginine biosynthesis
hak00250  Alanine, aspartate and glutamate metabolism
hak00280  Valine, leucine and isoleucine degradation
hak00350  Tyrosine metabolism
hak00470  D-Amino acid metabolism
hak00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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