KEGG   PATHWAY: halm00020
Entry
halm00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Haloprofundus sp. MHR1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
halm00020  Citrate cycle (TCA cycle)
halm00020

Module
halm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:halm00020]
halm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:halm00020]
Other DBs
GO: 0006099
Organism
Haloprofundus sp. MHR1 [GN:halm]
Gene
FCF25_08385  citrate synthase [KO:K01659] [EC:2.3.3.5]
FCF25_02805  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
FCF25_06375  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCF25_11445  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FCF25_11440  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FCF25_04440  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FCF25_04445  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FCF25_04820  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
FCF25_01295  FAD-dependent oxidoreductase [KO:K00239] [EC:1.3.5.1]
FCF25_04815  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FCF25_04805  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
FCF25_04810  succinate dehydrogenase [KO:K00242]
FCF25_05750  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FCF25_06645  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FCF25_02735  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FCF25_06360  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FCF25_02520  thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FCF25_06365  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
FCF25_02740  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
FCF25_06370  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
FCF25_13145  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
FCF25_13140  2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
halm00010  Glycolysis / Gluconeogenesis
halm00053  Ascorbate and aldarate metabolism
halm00061  Fatty acid biosynthesis
halm00071  Fatty acid degradation
halm00190  Oxidative phosphorylation
halm00220  Arginine biosynthesis
halm00250  Alanine, aspartate and glutamate metabolism
halm00280  Valine, leucine and isoleucine degradation
halm00350  Tyrosine metabolism
halm00470  D-Amino acid metabolism
halm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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