KEGG   PATHWAY: halw00020
Entry
halw00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Halomonas alkalicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
halw00020  Citrate cycle (TCA cycle)
halw00020

Module
halw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:halw00020]
Other DBs
GO: 0006099
Organism
Halomonas alkalicola [GN:halw]
Gene
B6N23_05090  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
B6N23_12145  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
B6N23_03315  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B6N23_04920  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B6N23_06085  isocitrate/isopropylmalate family dehydrogenase [KO:K00031] [EC:1.1.1.42]
B6N23_05065  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
B6N23_05060  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
B6N23_05045  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
B6N23_05050  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
B6N23_05075  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B6N23_05070  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
B6N23_05085  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
B6N23_05080  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
B6N23_03685  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
B6N23_03690  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
B6N23_03695  fumarate reductase subunit C [KO:K00246]
B6N23_03700  frdD; fumarate reductase subunit FrdD [KO:K00247]
B6N23_00950  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
B6N23_14360  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B6N23_14325  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
B6N23_06950  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
B6N23_06945  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
halw00010  Glycolysis / Gluconeogenesis
halw00053  Ascorbate and aldarate metabolism
halw00061  Fatty acid biosynthesis
halw00071  Fatty acid degradation
halw00190  Oxidative phosphorylation
halw00220  Arginine biosynthesis
halw00250  Alanine, aspartate and glutamate metabolism
halw00280  Valine, leucine and isoleucine degradation
halw00350  Tyrosine metabolism
halw00470  D-Amino acid metabolism
halw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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