KEGG   PATHWAY: hav00020
Entry
hav00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hafnia alvei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hav00020  Citrate cycle (TCA cycle)
hav00020

Module
hav_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hav00020]
hav_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hav00020]
hav_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hav00020]
hav_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hav00020]
hav_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hav00020]
Other DBs
GO: 0006099
Organism
Hafnia alvei [GN:hav]
Gene
AT03_06845  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AT03_12200  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AT03_18045  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AT03_12460  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AT03_06870  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
AT03_06875  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AT03_01505  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AT03_18055  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AT03_06885  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AT03_06880  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AT03_06860  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AT03_06865  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AT03_06850  succinate dehydrogenase [KO:K00241]
AT03_06855  sdhD; succinate dehydrogenase [KO:K00242]
AT03_03115  fumarate reductase [KO:K00244] [EC:1.3.5.1]
AT03_03110  fumarate reductase [KO:K00245] [EC:1.3.5.1]
AT03_03105  fumarate reductase [KO:K00246]
AT03_03100  fumarate reductase [KO:K00247]
AT03_08700  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AT03_13020  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AT03_11225  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AT03_03380  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AT03_09195  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AT03_20630  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AT03_18065  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AT03_18060  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
AT03_10845  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hav00010  Glycolysis / Gluconeogenesis
hav00053  Ascorbate and aldarate metabolism
hav00061  Fatty acid biosynthesis
hav00071  Fatty acid degradation
hav00190  Oxidative phosphorylation
hav00220  Arginine biosynthesis
hav00250  Alanine, aspartate and glutamate metabolism
hav00280  Valine, leucine and isoleucine degradation
hav00350  Tyrosine metabolism
hav00470  D-Amino acid metabolism
hav00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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