KEGG   PATHWAY: hbc00020
Entry
hbc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hyphomonadaceae bacterium UKL13-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hbc00020  Citrate cycle (TCA cycle)
hbc00020

Module
hbc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hbc00020]
hbc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hbc00020]
hbc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hbc00020]
hbc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hbc00020]
Other DBs
GO: 0006099
Organism
Hyphomonadaceae bacterium UKL13-1 [GN:hbc]
Gene
AEM38_05880  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AEM38_01695  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AEM38_09550  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AEM38_12830  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
AEM38_12825  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AEM38_07975  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AEM38_12815  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AEM38_12835  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
AEM38_12900  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AEM38_13455  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AEM38_11950  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AEM38_13445  hypothetical protein [KO:K00241]
AEM38_13450  hypothetical protein [KO:K00242]
AEM38_04520  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AEM38_13310  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AEM38_06620  transketolase [KO:K00163] [EC:1.2.4.1]
AEM38_08010  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
AEM38_08000  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AEM38_07995  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hbc00010  Glycolysis / Gluconeogenesis
hbc00053  Ascorbate and aldarate metabolism
hbc00061  Fatty acid biosynthesis
hbc00071  Fatty acid degradation
hbc00190  Oxidative phosphorylation
hbc00220  Arginine biosynthesis
hbc00250  Alanine, aspartate and glutamate metabolism
hbc00280  Valine, leucine and isoleucine degradation
hbc00350  Tyrosine metabolism
hbc00470  D-Amino acid metabolism
hbc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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