KEGG   PATHWAY: hbe00020
Entry
hbe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halomonas beimenensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hbe00020  Citrate cycle (TCA cycle)
hbe00020

Module
hbe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hbe00020]
hbe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hbe00020]
hbe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hbe00020]
hbe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hbe00020]
Other DBs
GO: 0006099
Organism
Halomonas beimenensis [GN:hbe]
Gene
BEI_2507  citrate synthase [KO:K01647] [EC:2.3.3.1]
BEI_3232  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BEI_2000  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BEI_2453  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BEI_2688  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BEI_2502  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BEI_2501  dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BEI_0583  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BEI_2500  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BEI_1412  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BEI_2498  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
BEI_2499  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
BEI_2504  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BEI_2503  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BEI_2506  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
BEI_2505  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BEI_1879  fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
BEI_2049  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BEI_2830  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BEI_2836  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BEI_0674  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BEI_0581  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
BEI_0675  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hbe00010  Glycolysis / Gluconeogenesis
hbe00053  Ascorbate and aldarate metabolism
hbe00061  Fatty acid biosynthesis
hbe00071  Fatty acid degradation
hbe00190  Oxidative phosphorylation
hbe00220  Arginine biosynthesis
hbe00250  Alanine, aspartate and glutamate metabolism
hbe00280  Valine, leucine and isoleucine degradation
hbe00350  Tyrosine metabolism
hbe00470  D-Amino acid metabolism
hbe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system