KEGG   PATHWAY: hgr00020
Entry
hgr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hylemonella gracilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hgr00020  Citrate cycle (TCA cycle)
hgr00020

Module
hgr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hgr00020]
hgr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hgr00020]
hgr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hgr00020]
hgr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hgr00020]
Other DBs
GO: 0006099
Organism
Hylemonella gracilis [GN:hgr]
Gene
DW355_05005  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
DW355_14700  citrate synthase [KO:K01647] [EC:2.3.3.1]
DW355_17485  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DW355_14655  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DW355_10410  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DW355_05920  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DW355_13415  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DW355_13410  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
DW355_11660  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DW355_13400  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DW355_03765  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DW355_03760  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DW355_14685  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DW355_14690  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DW355_14675  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DW355_14680  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DW355_15490  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DW355_09070  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
DW355_09075  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
DW355_16500  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DW355_14665  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DW355_11650  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DW355_13825  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DW355_11655  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hgr00010  Glycolysis / Gluconeogenesis
hgr00053  Ascorbate and aldarate metabolism
hgr00061  Fatty acid biosynthesis
hgr00071  Fatty acid degradation
hgr00190  Oxidative phosphorylation
hgr00220  Arginine biosynthesis
hgr00250  Alanine, aspartate and glutamate metabolism
hgr00280  Valine, leucine and isoleucine degradation
hgr00350  Tyrosine metabolism
hgr00470  D-Amino acid metabolism
hgr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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