KEGG   PATHWAY: hhao00020
Entry
hhao00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Halomonas halophila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hhao00020  Citrate cycle (TCA cycle)
hhao00020

Module
hhao_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hhao00020]
hhao_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hhao00020]
hhao_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hhao00020]
hhao_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hhao00020]
Other DBs
GO: 0006099
Organism
Halomonas halophila [GN:hhao]
Gene
QWG60_05960  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
QWG60_14545  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QWG60_07680  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
QWG60_06225  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QWG60_04835  isocitrate/isopropylmalate family dehydrogenase [KO:K00031] [EC:1.1.1.42]
QWG60_05985  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QWG60_05990  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QWG60_05995  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QWG60_06005  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QWG60_06000  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QWG60_10405  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
QWG60_05975  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QWG60_05980  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QWG60_05965  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
QWG60_05970  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
QWG60_08200  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
QWG60_07510  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QWG60_03965  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QWG60_03935  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
QWG60_13545  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
QWG60_13540  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hhao00010  Glycolysis / Gluconeogenesis
hhao00053  Ascorbate and aldarate metabolism
hhao00061  Fatty acid biosynthesis
hhao00071  Fatty acid degradation
hhao00190  Oxidative phosphorylation
hhao00220  Arginine biosynthesis
hhao00250  Alanine, aspartate and glutamate metabolism
hhao00280  Valine, leucine and isoleucine degradation
hhao00350  Tyrosine metabolism
hhao00470  D-Amino acid metabolism
hhao00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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