KEGG   PATHWAY: hhh00020
Entry
hhh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halomonas hydrothermalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hhh00020  Citrate cycle (TCA cycle)
hhh00020

Module
hhh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hhh00020]
hhh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hhh00020]
hhh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hhh00020]
hhh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hhh00020]
Other DBs
GO: 0006099
Organism
Halomonas hydrothermalis [GN:hhh]
Gene
CLM76_11600  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CLM76_06780  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CLM76_03125  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CLM76_14480  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CLM76_11815  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CLM76_01640  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CLM76_11625  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CLM76_11630  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CLM76_11635  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CLM76_11645  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CLM76_11640  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CLM76_11615  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CLM76_11620  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CLM76_11605  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CLM76_11610  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CLM76_07765  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CLM76_07770  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
CLM76_07775  fumarate reductase subunit C [KO:K00246]
CLM76_07780  fumarate reductase subunit D [KO:K00247]
CLM76_15430  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CLM76_14325  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CLM76_17925  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CLM76_00640  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
CLM76_17970  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CLM76_02380  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CLM76_02375  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hhh00010  Glycolysis / Gluconeogenesis
hhh00053  Ascorbate and aldarate metabolism
hhh00061  Fatty acid biosynthesis
hhh00071  Fatty acid degradation
hhh00190  Oxidative phosphorylation
hhh00220  Arginine biosynthesis
hhh00250  Alanine, aspartate and glutamate metabolism
hhh00280  Valine, leucine and isoleucine degradation
hhh00350  Tyrosine metabolism
hhh00470  D-Amino acid metabolism
hhh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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