KEGG   PATHWAY: hic00020
Entry
hic00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Haemophilus influenzae C486
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hic00020  Citrate cycle (TCA cycle)
hic00020

Module
hic_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hic00020]
hic_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hic00020]
hic_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hic00020]
Other DBs
GO: 0006099
Organism
Haemophilus influenzae C486 [GN:hic]
Gene
NTHIC486_01453  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NTHIC486_01452  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
NTHIC486_01426  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NTHIC486_01548  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
NTHIC486_01549  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
NTHIC486_00139  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
NTHIC486_00140  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
NTHIC486_00141  frdC; Fumarate reductase 15 kDa hydrophobic protein [KO:K00246]
NTHIC486_00142  frdD; Fumarate reductase 13 kDa hydrophobic protein [KO:K00247]
NTHIC486_01305  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NTHIC486_01535  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NTHIC486_00165  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
NTHIC486_01424  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
NTHIC486_01425  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hic00010  Glycolysis / Gluconeogenesis
hic00061  Fatty acid biosynthesis
hic00071  Fatty acid degradation
hic00190  Oxidative phosphorylation
hic00220  Arginine biosynthesis
hic00250  Alanine, aspartate and glutamate metabolism
hic00280  Valine, leucine and isoleucine degradation
hic00350  Tyrosine metabolism
hic00470  D-Amino acid metabolism
hic00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system