KEGG   PATHWAY: hil00020
Entry
hil00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Haemophilus influenzae F3047 (nontypeable)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hil00020  Citrate cycle (TCA cycle)
hil00020

Module
hil_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hil00020]
hil_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hil00020]
hil_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hil00020]
Other DBs
GO: 0006099
Organism
Haemophilus influenzae F3047 (nontypeable) [GN:hil]
Gene
HICON_14390  2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
HICON_14400  dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
HICON_14660  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HICON_01000  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
HICON_01010  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
HICON_05690  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
HICON_05700  fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
HICON_05710  fumarate reductase subunit C [KO:K00246]
HICON_05720  fumarate reductase subunit D [KO:K00247]
HICON_17150  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
HICON_00870  malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
HICON_05950  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HICON_14680  pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
HICON_14670  Dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hil00010  Glycolysis / Gluconeogenesis
hil00061  Fatty acid biosynthesis
hil00190  Oxidative phosphorylation
hil00220  Arginine biosynthesis
hil00250  Alanine, aspartate and glutamate metabolism
hil00280  Valine, leucine and isoleucine degradation
hil00350  Tyrosine metabolism
hil00470  D-Amino acid metabolism
hil00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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