KEGG   PATHWAY: hpas00020
Entry
hpas00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Glaesserella parasuis SH03
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hpas00020  Citrate cycle (TCA cycle)
hpas00020

Module
hpas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hpas00020]
hpas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hpas00020]
hpas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hpas00020]
hpas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hpas00020]
hpas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hpas00020]
Other DBs
GO: 0006099
Organism
Glaesserella parasuis SH03 [GN:hpas]
Gene
JL26_06230  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
JL26_06235  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
JL26_06240  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JL26_02870  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
JL26_02865  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
JL26_03400  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
JL26_02855  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
JL26_02860  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
JL26_06095  fumarate reductase [KO:K00244] [EC:1.3.5.1]
JL26_06090  fumarate reductase [KO:K00245] [EC:1.3.5.1]
JL26_06085  fumarate reductase [KO:K00246]
JL26_06080  fumarate reductase [KO:K00247]
JL26_09475  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JL26_01755  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JL26_02560  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
JL26_03390  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
JL26_03395  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hpas00010  Glycolysis / Gluconeogenesis
hpas00061  Fatty acid biosynthesis
hpas00071  Fatty acid degradation
hpas00190  Oxidative phosphorylation
hpas00220  Arginine biosynthesis
hpas00250  Alanine, aspartate and glutamate metabolism
hpas00280  Valine, leucine and isoleucine degradation
hpas00350  Tyrosine metabolism
hpas00470  D-Amino acid metabolism
hpas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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