KEGG   PATHWAY: hrb00970
Entry
hrb00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Herbaspirillum rubrisubalbicans
Class
Genetic Information Processing; Translation
Pathway map
hrb00970  Aminoacyl-tRNA biosynthesis
hrb00970

Organism
Herbaspirillum rubrisubalbicans [GN:hrb]
Gene
Hrubri_0477  trnA; tRNA-Ala [KO:K14218]
Hrubri_3848  trnA; tRNA-Ala [KO:K14218]
Hrubri_3096  trnA; tRNA-Ala [KO:K14218]
Hrubri_4688  trnA; tRNA-Ala [KO:K14218]
Hrubri_3093  trnA; tRNA-Ala [KO:K14218]
Hrubri_2816  trnR; tRNA-Arg [KO:K14219]
Hrubri_4324  trnR; tRNA-Arg [KO:K14219]
Hrubri_2934  trnR; tRNA-Arg [KO:K14219]
Hrubri_3175  trnN; tRNA-Asn [KO:K14220]
Hrubri_3176  trnN; tRNA-Asn [KO:K14220]
Hrubri_4257  trnD; tRNA-Asp [KO:K14221]
Hrubri_2657  trnD; tRNA-Asp [KO:K14221]
Hrubri_1829  trnC; tRNA-Cys [KO:K14222]
Hrubri_3882  trnQ; tRNA-Gln [KO:K14223]
Hrubri_3094  trnE; tRNA-Glu [KO:K14224]
Hrubri_3095  trnE; tRNA-Glu [KO:K14224]
Hrubri_3092  trnE; tRNA-Glu [KO:K14224]
Hrubri_1828  trnG; tRNA-Gly [KO:K14225]
Hrubri_0109  trnG; tRNA-Gly [KO:K14225]
Hrubri_0493  trnG; tRNA-Gly [KO:K14225]
Hrubri_1830  trnG; tRNA-Gly [KO:K14225]
Hrubri_1831  trnG; tRNA-Gly [KO:K14225]
Hrubri_1832  trnG; tRNA-Gly [KO:K14225]
Hrubri_1387  trnH; tRNA-His [KO:K14226]
Hrubri_4689  trnI; tRNA-Ile [KO:K14227]
Hrubri_3849  trnI; tRNA-Ile [KO:K14227]
Hrubri_0476  trnI; tRNA-Ile [KO:K14227]
Hrubri_2666  trnL; tRNA-Leu [KO:K14228]
Hrubri_2957  trnL; tRNA-Leu [KO:K14228]
Hrubri_1855  trnL; tRNA-Leu [KO:K14228]
Hrubri_1742  trnL; tRNA-Leu [KO:K14228]
Hrubri_1317  trnL; tRNA-Leu [KO:K14228]
Hrubri_1638  trnL; tRNA-Leu [KO:K14228]
Hrubri_1663  trnK; tRNA-Lys [KO:K14229]
Hrubri_1664  trnK; tRNA-Lys [KO:K14229]
Hrubri_1031  trnK; tRNA-Lys [KO:K14229]
Hrubri_3241  trnM; tRNA-Met [KO:K14230]
Hrubri_0739  trnM; tRNA-Met [KO:K14230]
Hrubri_0700  trnM; tRNA-Met [KO:K14230]
Hrubri_4126  trnF; tRNA-Phe [KO:K14231]
Hrubri_0342  trnP; tRNA-Pro [KO:K14232]
Hrubri_2933  trnP; tRNA-Pro [KO:K14232]
Hrubri_1900  trnP; tRNA-Pro [KO:K14232]
Hrubri_2854  trnS; tRNA-Ser [KO:K14233]
Hrubri_2022  trnS; tRNA-Ser [KO:K14233]
Hrubri_1797  trnS; tRNA-Ser [KO:K14233]
Hrubri_1392  trnS; tRNA-Ser [KO:K14233]
Hrubri_4005  trnT; tRNA-Thr [KO:K14234]
Hrubri_0110  trnT; tRNA-Thr [KO:K14234]
Hrubri_3488  trnT; tRNA-Thr [KO:K14234]
Hrubri_0112  trnW; tRNA-Trp [KO:K14235]
Hrubri_0108  trnY; tRNA-Tyr [KO:K14236]
Hrubri_2658  trnV; tRNA-Val [KO:K14237]
Hrubri_1859  trnV; tRNA-Val [KO:K14237]
Hrubri_3423  trnV; tRNA-Val [KO:K14237]
Hrubri_1860  trnV; tRNA-Val [KO:K14237]
Hrubri_3097  gltX; glutamyl-tRNA synthetase [KO:K01885] [EC:6.1.1.17]
Hrubri_4610  gatA; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit [KO:K02433] [EC:6.3.5.6 6.3.5.7]
Hrubri_1707  amidase family protein [KO:K02433] [EC:6.3.5.6 6.3.5.7]
Hrubri_4609  gatB; Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit B [KO:K02434] [EC:6.3.5.6 6.3.5.7]
Hrubri_4611  gatC; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [KO:K02435] [EC:6.3.5.6 6.3.5.7]
Hrubri_3599  glnS; Glutaminyl-tRNA synthetase [KO:K01886] [EC:6.1.1.18]
Hrubri_3594  alaS; Alanyl-tRNA synthetase protein [KO:K01872] [EC:6.1.1.7]
Hrubri_1792  threonyl/alanyl tRNA synthetase SAD protein [KO:K01872] [EC:6.1.1.7]
Hrubri_0218  aspS; aspartyl-tRNA synthetase protein [KO:K01876] [EC:6.1.1.12]
Hrubri_0686  glyQ; glycyl-tRNA synthetase alpha chain protein [KO:K01878] [EC:6.1.1.14]
Hrubri_0685  glyS; glycyl-tRNA synthetase beta chain protein [KO:K01879] [EC:6.1.1.14]
Hrubri_1863  thrS; threonyl-tRNA synthetase protein [KO:K01868] [EC:6.1.1.3]
Hrubri_1795  serS; seryl-tRNA synthetase [KO:K01875] [EC:6.1.1.11]
Hrubri_1751  cysS; cysteinyl-tRNA synthetase protein [KO:K01883] [EC:6.1.1.16]
Hrubri_3099  metG; methionyl-tRNA synthetase [KO:K01874] [EC:6.1.1.10]
Hrubri_1967  fmt; methionyl-tRNA formyltransferase protein [KO:K00604] [EC:2.1.2.9]
Hrubri_4279  fmt; methionyl-tRNA formyltransferase protein [KO:K00604] [EC:2.1.2.9]
Hrubri_0409  valS; valyl-tRNA synthetase [KO:K01873] [EC:6.1.1.9]
Hrubri_0564  leuS; leucyl-tRNA synthetase [KO:K01869] [EC:6.1.1.4]
Hrubri_1224  ileS; isoleucyl-tRNA synthetase protein [KO:K01870] [EC:6.1.1.5]
Hrubri_2837  lysS; lysyl-tRNA synthetase (Class II) protein [KO:K04567] [EC:6.1.1.6]
Hrubri_4283  argS; arginyl-tRNA synthetase protein [KO:K01887] [EC:6.1.1.19]
Hrubri_0350  proS; prolyl-tRNA synthetase [KO:K01881] [EC:6.1.1.15]
Hrubri_2974  hisS; histidyl-tRNA synthetase protein [KO:K01892] [EC:6.1.1.21]
Hrubri_1867  pheS; phenylalanyl-tRNA synthetase alpha chain protein [KO:K01889] [EC:6.1.1.20]
Hrubri_1868  pheT; phenylalanyl-tRNA synthetase beta chain protein [KO:K01890] [EC:6.1.1.20]
Hrubri_0387  tyrS; tyrosyl-tRNA synthetase [KO:K01866] [EC:6.1.1.1]
Hrubri_1364  trpS; tryptophanyl-tRNA synthetase protein [KO:K01867] [EC:6.1.1.2]
Hrubri_3293  trpS; tryptophanyl-tRNA synthetase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
hrb00250  Alanine, aspartate and glutamate metabolism
hrb00260  Glycine, serine and threonine metabolism
hrb00270  Cysteine and methionine metabolism
hrb00290  Valine, leucine and isoleucine biosynthesis
hrb00300  Lysine biosynthesis
hrb00330  Arginine and proline metabolism
hrb00340  Histidine metabolism
hrb00380  Tryptophan metabolism
hrb00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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