KEGG   PATHWAY: htn00020
Entry
htn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hydrogenophaga taeniospiralis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
htn00020  Citrate cycle (TCA cycle)
htn00020

Module
htn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:htn00020]
htn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:htn00020]
htn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:htn00020]
htn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:htn00020]
htn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:htn00020]
Other DBs
GO: 0006099
Organism
Hydrogenophaga taeniospiralis [GN:htn]
Gene
KI616_19850  citrate synthase [KO:K01647] [EC:2.3.3.1]
KI616_19755  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KI616_19805  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KI616_12570  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KI616_12580  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KI616_01410  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
KI616_11490  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KI616_11495  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KI616_11410  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KI616_11500  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KI616_26450  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KI616_26455  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KI616_23180  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
KI616_19835  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KI616_18990  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KI616_19840  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KI616_19825  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KI616_19830  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KI616_10885  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KI616_10890  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KI616_19815  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KI616_00870  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KI616_11400  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KI616_20710  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
KI616_14250  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KI616_14245  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
KI616_11405  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
KI616_14240  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
htn00010  Glycolysis / Gluconeogenesis
htn00053  Ascorbate and aldarate metabolism
htn00061  Fatty acid biosynthesis
htn00071  Fatty acid degradation
htn00190  Oxidative phosphorylation
htn00220  Arginine biosynthesis
htn00250  Alanine, aspartate and glutamate metabolism
htn00280  Valine, leucine and isoleucine degradation
htn00350  Tyrosine metabolism
htn00470  D-Amino acid metabolism
htn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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