KEGG   PATHWAY: hvi03008
Entry
hvi03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Homalodisca vitripennis (glassy-winged sharpshooter)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
hvi03008  Ribosome biogenesis in eukaryotes
hvi03008

Organism
Homalodisca vitripennis (glassy-winged sharpshooter) [GN:hvi]
Gene
124360671  casein kinase II subunit beta-like [KO:K03115]
124360672  casein kinase II subunit beta [KO:K03115]
124368111  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
124366989  nucleolar protein 6 [KO:K14544]
124353640  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
124364103  WD repeat-containing protein 43 isoform X1 [KO:K14546]
124357753  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
124365026  HEAT repeat-containing protein 1 [KO:K14550]
124366411  WD repeat-containing protein 75-like [KO:K14552]
124358929  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
124371132  LOW QUALITY PROTEIN: WD repeat-containing protein 36-like [KO:K14554]
124362949  WD repeat-containing protein 36-like [KO:K14554]
124362629  transducin beta-like protein 3 [KO:K14555]
124359094  WD repeat-containing protein 3 [KO:K14556]
124352852  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
124373813  periodic tryptophan protein 2 homolog [KO:K14558]
124354893  U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [KO:K14559]
124360873  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
124359135  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
124364849  rRNA 2'-O-methyltransferase fibrillarin-like isoform X1 [KO:K14563] [EC:2.1.1.-]
124365543  rRNA 2'-O-methyltransferase fibrillarin-like [KO:K14563] [EC:2.1.1.-]
124359821  nucleolar protein 56 [KO:K14564]
124354266  LOW QUALITY PROTEIN: NHP2-like protein 1 homolog [KO:K12845]
124364495  LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
124371542  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
124357267  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
124369087  probable H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
124357330  probable H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
124374896  H/ACA ribonucleoprotein complex subunit NOP10-like [KO:K11130]
124354829  H/ACA ribonucleoprotein complex subunit NOP10-like [KO:K11130]
124356557  rRNA-processing protein FCF1 homolog isoform X1 [KO:K14566]
124358327  LOW QUALITY PROTEIN: ribosome biogenesis protein BMS1 homolog [KO:K14569]
124357533  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
124353532  LOW QUALITY PROTEIN: probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
124354191  ribonucleases P/MRP protein subunit POP1 isoform X1 [KO:K01164] [EC:3.1.26.5]
124371527  ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
124371886  ribonuclease P/MRP protein subunit POP5-like [KO:K03537] [EC:3.1.26.5]
124372834  ribonuclease P/MRP protein subunit POP5-like [KO:K03537] [EC:3.1.26.5]
124366278  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
124364789  ribonuclease P protein subunit p30-like [KO:K03539] [EC:3.1.26.5]
124365540  ribonuclease P protein subunit p30-like [KO:K03539] [EC:3.1.26.5]
124358186  uncharacterized protein LOC124358186 [KO:K14530] [EC:3.1.26.5]
124369712  uncharacterized protein LOC124369712 [KO:K14530] [EC:3.1.26.5]
124371830  uncharacterized protein LOC124371830 [KO:K14530] [EC:3.1.26.5]
124361350  uncharacterized protein LOC124361350 [KO:K14530] [EC:3.1.26.5]
124372024  uncharacterized protein LOC124372024 [KO:K14530] [EC:3.1.26.5]
124373151  uncharacterized protein LOC124373151 [KO:K14530] [EC:3.1.26.5]
124353259  uncharacterized protein LOC124353259 [KO:K14530] [EC:3.1.26.5]
124363372  uncharacterized protein LOC124363372 [KO:K14530] [EC:3.1.26.5]
124363530  uncharacterized protein LOC124363530 [KO:K14530] [EC:3.1.26.5]
124363673  uncharacterized protein LOC124363673 [KO:K14530] [EC:3.1.26.5]
124365518  uncharacterized protein LOC124365518 [KO:K14530] [EC:3.1.26.5]
124366843  uncharacterized protein LOC124366843 [KO:K14530] [EC:3.1.26.5]
124366851  uncharacterized protein LOC124366851 [KO:K14530] [EC:3.1.26.5]
124370189  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
124370941  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
124372957  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
124353854  RNA exonuclease 5 [KO:K14570] [EC:3.1.-.-]
124367283  RNA exonuclease 1 homolog isoform X1 [KO:K14570] [EC:3.1.-.-]
124359541  LOW QUALITY PROTEIN: oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
124360095  5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
124370924  LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
124353206  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
124362671  nucleolar GTP-binding protein 1 [KO:K06943]
124365905  nucleolar GTP-binding protein 2 [KO:K14537]
124359814  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
124361125  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
124369302  nuclear valosin-containing protein-like isoform X1 [KO:K14571]
124357473  RNA-binding protein 28 [KO:K14573]
124364174  RNA-binding protein NOB1 [KO:K11883]
124367857  GTP-binding nuclear protein Ran [KO:K07936]
124356901  exportin-1 [KO:K14290]
124362393  60S ribosomal export protein NMD3 [KO:K07562]
124356701  nuclear RNA export factor 1-like [KO:K14284]
124363458  NTF2-related export protein [KO:K14285]
124371425  LOW QUALITY PROTEIN: eukaryotic translation initiation factor 6-like [KO:K03264]
124364178  LOW QUALITY PROTEIN: eukaryotic translation initiation factor 6-like [KO:K03264]
124374507  ribosome maturation protein SBDS-like [KO:K14574]
124367670  ribosome maturation protein SBDS [KO:K14574]
124366401  LOW QUALITY PROTEIN: elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
124360741  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
124371794  adenylate kinase isoenzyme 6-like [KO:K18532] [EC:2.7.4.3]
124353786  serine/threonine-protein kinase RIO1-like [KO:K07178] [EC:2.7.11.1]
124352667  serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
124372029  small subunit ribosomal RNA [KO:K01979]
124370068  small subunit ribosomal RNA [KO:K01979]
124372031  large subunit ribosomal RNA [KO:K01982]
124361625  small nucleolar RNA U3 [KO:K14483]
124361619  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
hvi03010  Ribosome
KO pathway
ko03008   
LinkDB

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