KEGG   PATHWAY: itr00020
Entry
itr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ipomoea triloba (trilobed morning glory)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
itr00020  Citrate cycle (TCA cycle)
itr00020

Module
itr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:itr00020]
itr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:itr00020]
itr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:itr00020]
Other DBs
GO: 0006099
Organism
Ipomoea triloba (trilobed morning glory) [GN:itr]
Gene
116016694  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
115996374  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
116011431  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
116002187  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
116030863  ATP-citrate synthase beta chain protein 2-like isoform X1 [KO:K01648] [EC:2.3.3.8]
116031345  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
116025737  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
116027765  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
116003959  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
115996856  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
116020277  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
116020613  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
116013622  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
115999269  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
116022519  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
116013559  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
116027265  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
116001219  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
116001947  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
116019355  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
116013989  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
116004842  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
116022967  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
116002050  leghemoglobin reductase [KO:K00382] [EC:1.8.1.4]
116002052  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
116002053  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
116033581  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
116007436  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
116028016  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
116001576  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
116001578  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
115995605  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
116014380  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
116016297  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
116025766  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
116014957  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
116020961  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
116013416  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
116019546  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
116013511  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
116013643  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
116024573  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
116005227  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
116002468  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
116017417  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
116032052  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
116033465  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
116009870  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
116022995  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
116011302  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
116011325  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
116000426  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
116022085  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
115999893  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
116004898  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
115996985  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
116025781  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
116031563  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
116032624  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
116009968  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
115996500  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
116019526  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
116021173  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
116010478  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
115997378  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
116025875  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
itr00010  Glycolysis / Gluconeogenesis
itr00053  Ascorbate and aldarate metabolism
itr00061  Fatty acid biosynthesis
itr00062  Fatty acid elongation
itr00071  Fatty acid degradation
itr00190  Oxidative phosphorylation
itr00220  Arginine biosynthesis
itr00250  Alanine, aspartate and glutamate metabolism
itr00280  Valine, leucine and isoleucine degradation
itr00350  Tyrosine metabolism
itr00470  D-Amino acid metabolism
itr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system