KEGG   PATHWAY: jah00020
Entry
jah00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Janthinobacterium sp. HH102
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
jah00020  Citrate cycle (TCA cycle)
jah00020

Module
jah_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:jah00020]
jah_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:jah00020]
jah_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:jah00020]
jah_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:jah00020]
jah_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:jah00020]
Other DBs
GO: 0006099
Organism
Janthinobacterium sp. HH102 [GN:jah]
Gene
JAB4_031310  citZ; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
JAB4_043580  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
JAB4_043680  acnA; Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
JAB4_018130  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
JAB4_034830  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
JAB4_043530  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JAB4_043520  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
JAB4_000920  mtr; Mycothione reductase [KO:K00382] [EC:1.8.1.4]
JAB4_043500  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JAB4_048030  sthA; Soluble pyridine nucleotide transhydrogenase [KO:K00382] [EC:1.8.1.4]
JAB4_058420  lpdG; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JAB4_054050  sucD; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
JAB4_054060  sucC; Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
JAB4_043740  cat1; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
JAB4_043610  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JAB4_043600  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JAB4_043630  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
JAB4_043620  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
JAB4_014170  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
JAB4_015540  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
JAB4_043650  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JAB4_052020  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
JAB4_000500  pckG; Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
JAB4_048050  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
JAB4_048040  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
jah00010  Glycolysis / Gluconeogenesis
jah00053  Ascorbate and aldarate metabolism
jah00061  Fatty acid biosynthesis
jah00071  Fatty acid degradation
jah00190  Oxidative phosphorylation
jah00220  Arginine biosynthesis
jah00250  Alanine, aspartate and glutamate metabolism
jah00280  Valine, leucine and isoleucine degradation
jah00350  Tyrosine metabolism
jah00470  D-Amino acid metabolism
jah00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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