KEGG   PATHWAY: jaj00020
Entry
jaj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Janthinobacterium sp. 17J80-10
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
jaj00020  Citrate cycle (TCA cycle)
jaj00020

Module
jaj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:jaj00020]
jaj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:jaj00020]
jaj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:jaj00020]
jaj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:jaj00020]
jaj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:jaj00020]
Other DBs
GO: 0006099
Organism
Janthinobacterium sp. 17J80-10 [GN:jaj]
Gene
EKL02_12200  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EKL02_12250  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EKL02_11095  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EKL02_14625  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EKL02_12195  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EKL02_12190  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EKL02_06625  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EKL02_00695  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EKL02_12185  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EKL02_10190  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EKL02_05175  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EKL02_05170  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EKL02_11460  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
EKL02_12215  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EKL02_12210  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EKL02_12225  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EKL02_12220  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
EKL02_07525  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EKL02_06130  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EKL02_12235  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EKL02_02520  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
EKL02_06610  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EKL02_06615  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
EKL02_00700  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
EKL02_11720  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
jaj00010  Glycolysis / Gluconeogenesis
jaj00053  Ascorbate and aldarate metabolism
jaj00061  Fatty acid biosynthesis
jaj00071  Fatty acid degradation
jaj00190  Oxidative phosphorylation
jaj00220  Arginine biosynthesis
jaj00250  Alanine, aspartate and glutamate metabolism
jaj00280  Valine, leucine and isoleucine degradation
jaj00350  Tyrosine metabolism
jaj00470  D-Amino acid metabolism
jaj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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