KEGG   PATHWAY: kai00020
Entry
kai00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kaistia sp. 32K
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kai00020  Citrate cycle (TCA cycle)
kai00020

Module
kai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kai00020]
kai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kai00020]
kai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kai00020]
kai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kai00020]
kai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kai00020]
Other DBs
GO: 0006099
Organism
Kaistia sp. 32K [GN:kai]
Gene
K32_22860  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
K32_42920  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
K32_29450  icdA; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
K32_42630  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
K32_42620  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
K32_20710  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K32_42610  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K32_42640  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
K32_42650  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
K32_30280  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
K32_42730  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K32_42710  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K32_42750  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
K32_42740  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
K32_30200  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
K32_42660  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K32_40020  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
K32_45030  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
K32_00080  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
K32_20670  pdhA2; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
K32_20680  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
K32_20700  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kai00010  Glycolysis / Gluconeogenesis
kai00053  Ascorbate and aldarate metabolism
kai00061  Fatty acid biosynthesis
kai00071  Fatty acid degradation
kai00190  Oxidative phosphorylation
kai00220  Arginine biosynthesis
kai00250  Alanine, aspartate and glutamate metabolism
kai00280  Valine, leucine and isoleucine degradation
kai00350  Tyrosine metabolism
kai00470  D-Amino acid metabolism
kai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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