KEGG   PATHWAY: kas00020
Entry
kas00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kluyvera ascorbata
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kas00020  Citrate cycle (TCA cycle)
kas00020

Module
kas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kas00020]
kas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kas00020]
kas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kas00020]
kas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kas00020]
kas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kas00020]
Other DBs
GO: 0006099
Organism
Kluyvera ascorbata [GN:kas]
Gene
KATP_31770  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
KATP_25320  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KATP_37550  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KATP_27360  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
KATP_31720  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
KATP_31710  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
KATP_37600  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KATP_31690  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
KATP_31700  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
KATP_31740  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KATP_31730  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KATP_31760  hypothetical protein [KO:K00241]
KATP_31750  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
KATP_41240  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
KATP_41250  succinate dehydrogenase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
KATP_41260  frdC; fumarate reductase subunit C [KO:K00246]
KATP_41270  frdD; fumarate reductase subunit D [KO:K00247]
KATP_16480  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
KATP_23300  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
KATP_23290  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
KATP_20040  hypothetical protein [KO:K01675] [EC:4.2.1.2]
KATP_04750  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KATP_08290  mqo_1; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KATP_14420  mqo_2; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KATP_03340  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
KATP_37620  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
KATP_37610  aceF; acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
KATP_24480  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kas00010  Glycolysis / Gluconeogenesis
kas00053  Ascorbate and aldarate metabolism
kas00061  Fatty acid biosynthesis
kas00071  Fatty acid degradation
kas00190  Oxidative phosphorylation
kas00220  Arginine biosynthesis
kas00250  Alanine, aspartate and glutamate metabolism
kas00280  Valine, leucine and isoleucine degradation
kas00350  Tyrosine metabolism
kas00470  D-Amino acid metabolism
kas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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