KEGG   PATHWAY: kko00020
Entry
kko00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kangiella koreensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kko00020  Citrate cycle (TCA cycle)
kko00020

Module
kko_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kko00020]
kko_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kko00020]
kko_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kko00020]
kko_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kko00020]
Other DBs
GO: 0006099
Organism
Kangiella koreensis [GN:kko]
Gene
Kkor_1546  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Kkor_2204  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Kkor_1049  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Kkor_1100  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Kkor_1541  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Kkor_1540  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Kkor_0714  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Kkor_1538  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Kkor_1539  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Kkor_1543  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Kkor_1542  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Kkor_1545  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Kkor_1544  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Kkor_0997  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Kkor_1778  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Kkor_2420  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Kkor_1676  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Kkor_0712  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Kkor_0713  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kko00010  Glycolysis / Gluconeogenesis
kko00061  Fatty acid biosynthesis
kko00071  Fatty acid degradation
kko00190  Oxidative phosphorylation
kko00220  Arginine biosynthesis
kko00250  Alanine, aspartate and glutamate metabolism
kko00280  Valine, leucine and isoleucine degradation
kko00350  Tyrosine metabolism
kko00470  D-Amino acid metabolism
kko00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system