KEGG   PATHWAY: kll00020
Entry
kll00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella sp. LTGPAF-6F
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kll00020  Citrate cycle (TCA cycle)
kll00020

Module
kll_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kll00020]
kll_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kll00020]
kll_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kll00020]
kll_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kll00020]
kll_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kll00020]
Other DBs
GO: 0006099
Organism
Klebsiella sp. LTGPAF-6F [GN:kll]
Gene
BJF97_08920  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BJF97_19470  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BJF97_12745  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BJF97_05350  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BJF97_11850  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BJF97_08945  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BJF97_08950  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BJF97_14665  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BJF97_05330  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BJF97_08960  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BJF97_08955  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BJF97_08935  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BJF97_08940  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BJF97_08925  sdhC; succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
BJF97_08930  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BJF97_03170  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
BJF97_03165  fumarate reductase [KO:K00245] [EC:1.3.5.1]
BJF97_03160  fumarate reductase subunit C [KO:K00246]
BJF97_03155  fumarate reductase [KO:K00247]
BJF97_08985  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BJF97_15900  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BJF97_16050  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BJF97_16045  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BJF97_16900  hypothetical protein [KO:K01675] [EC:4.2.1.2]
BJF97_26170  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BJF97_15855  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BJF97_20245  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BJF97_17545  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BJF97_26850  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BJF97_05320  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BJF97_14670  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
BJF97_05325  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BJF97_19150  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
BJF97_13355  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kll00010  Glycolysis / Gluconeogenesis
kll00053  Ascorbate and aldarate metabolism
kll00061  Fatty acid biosynthesis
kll00071  Fatty acid degradation
kll00190  Oxidative phosphorylation
kll00220  Arginine biosynthesis
kll00250  Alanine, aspartate and glutamate metabolism
kll00280  Valine, leucine and isoleucine degradation
kll00350  Tyrosine metabolism
kll00470  D-Amino acid metabolism
kll00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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