KEGG   PATHWAY: koc00020
Entry
koc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella oxytoca CAV1374
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
koc00020  Citrate cycle (TCA cycle)
koc00020

Module
koc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:koc00020]
koc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:koc00020]
koc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:koc00020]
koc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:koc00020]
koc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:koc00020]
Other DBs
GO: 0006099
Organism
Klebsiella oxytoca CAV1374 [GN:koc]
Gene
AB185_16695  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AB185_27580  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AB185_23785  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AB185_31365  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AB185_25560  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AB185_24580  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AB185_27555  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
AB185_27550  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AB185_31385  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AB185_22655  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AB185_27540  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AB185_27545  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AB185_27565  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AB185_27560  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AB185_27575  sdhC; succinate dehydrogenase [KO:K00241]
AB185_27570  sdhD; succinate dehydrogenase [KO:K00242]
AB185_33810  fumarate reductase [KO:K00244] [EC:1.3.5.1]
AB185_33815  fumarate reductase [KO:K00245] [EC:1.3.5.1]
AB185_33820  fumarate reductase [KO:K00246]
AB185_33825  fumarate reductase [KO:K00247]
AB185_19965  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AB185_20120  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AB185_27520  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AB185_19970  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AB185_19125  hypothetical protein [KO:K01675] [EC:4.2.1.2]
AB185_09780  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AB185_20165  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AB185_16035  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AB185_09095  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AB185_18495  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AB185_31395  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AB185_22660  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
AB185_31390  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
AB185_17040  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
AB185_21245  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
koc00010  Glycolysis / Gluconeogenesis
koc00053  Ascorbate and aldarate metabolism
koc00061  Fatty acid biosynthesis
koc00071  Fatty acid degradation
koc00190  Oxidative phosphorylation
koc00220  Arginine biosynthesis
koc00250  Alanine, aspartate and glutamate metabolism
koc00280  Valine, leucine and isoleucine degradation
koc00350  Tyrosine metabolism
koc00470  D-Amino acid metabolism
koc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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