KEGG   PATHWAY: kot00020
Entry
kot00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kosakonia sp. CCTCC M2018092
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kot00020  Citrate cycle (TCA cycle)
kot00020

Module
kot_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kot00020]
kot_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kot00020]
kot_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kot00020]
kot_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kot00020]
kot_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kot00020]
Other DBs
GO: 0006099
Organism
Kosakonia sp. CCTCC M2018092 [GN:kot]
Gene
EH164_15700  citrate synthase [KO:K01647] [EC:2.3.3.1]
EH164_10775  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EH164_18425  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EH164_13540  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EH164_15675  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EH164_15670  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EH164_16865  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EH164_18440  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EH164_15660  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EH164_15665  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EH164_15685  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EH164_15680  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EH164_15695  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
EH164_15690  succinate dehydrogenase membrane anchor subunit [KO:K00242]
EH164_20235  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
EH164_20240  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
EH164_20245  frdC; fumarate reductase subunit FrdC [KO:K00246]
EH164_20250  frdD; fumarate reductase subunit FrdD [KO:K00247]
EH164_12370  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EH164_10010  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EH164_12365  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EH164_12830  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
EH164_02295  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EH164_10050  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
EH164_07370  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
EH164_01570  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EH164_18450  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EH164_16870  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
EH164_18445  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
EH164_11135  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kot00010  Glycolysis / Gluconeogenesis
kot00053  Ascorbate and aldarate metabolism
kot00061  Fatty acid biosynthesis
kot00071  Fatty acid degradation
kot00190  Oxidative phosphorylation
kot00220  Arginine biosynthesis
kot00250  Alanine, aspartate and glutamate metabolism
kot00280  Valine, leucine and isoleucine degradation
kot00350  Tyrosine metabolism
kot00470  D-Amino acid metabolism
kot00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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