KEGG   PATHWAY: kox00020
Entry
kox00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella michiganensis KCTC 1686
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kox00020  Citrate cycle (TCA cycle)
kox00020

Module
kox_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kox00020]
kox_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kox00020]
kox_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kox00020]
kox_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kox00020]
kox_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kox00020]
Other DBs
GO: 0006099
Organism
Klebsiella michiganensis KCTC 1686 [GN:kox]
Gene
KOX_25260  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
KOX_14565  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
KOX_18415  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KOX_10580  putative hydratase [KO:K01681] [EC:4.2.1.3]
KOX_16605  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KOX_11075  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KOX_17560  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KOX_14590  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KOX_14595  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
KOX_20455  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KOX_11055  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KOX_14605  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
KOX_14600  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
KOX_14580  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KOX_14585  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KOX_14570  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
KOX_14575  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
KOX_08775  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
KOX_08770  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
KOX_08765  fumarate reductase subunit C [KO:K00246]
KOX_08760  fumarate reductase subunit D [KO:K00247]
KOX_14640  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KOX_21730  fumarate hydratase FumB [KO:K01676] [EC:4.2.1.2]
KOX_21895  fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
KOX_21890  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KOX_22745  hypothetical protein [KO:K01675] [EC:4.2.1.2]
KOX_04000  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KOX_26070  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KOX_21685  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KOX_04670  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KOX_23370  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KOX_11045  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
KOX_20460  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
KOX_11050  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
KOX_24915  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
KOX_19080  putative oxidoreductase, Fe-S subunit [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kox00010  Glycolysis / Gluconeogenesis
kox00053  Ascorbate and aldarate metabolism
kox00061  Fatty acid biosynthesis
kox00071  Fatty acid degradation
kox00190  Oxidative phosphorylation
kox00220  Arginine biosynthesis
kox00250  Alanine, aspartate and glutamate metabolism
kox00280  Valine, leucine and isoleucine degradation
kox00350  Tyrosine metabolism
kox00470  D-Amino acid metabolism
kox00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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