KEGG   PATHWAY: kpm00020
Entry
kpm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella pneumoniae subsp. pneumoniae HS11286
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kpm00020  Citrate cycle (TCA cycle)
kpm00020

Module
kpm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kpm00020]
kpm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kpm00020]
kpm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kpm00020]
kpm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kpm00020]
kpm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kpm00020]
Other DBs
GO: 0006099
Organism
Klebsiella pneumoniae subsp. pneumoniae HS11286 [GN:kpm]
Gene
KPHS_12970  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
KPHS_15630  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
KPHS_21790  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KPHS_08450  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KPHS_20210  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KPHS_15690  alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
KPHS_15700  dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
KPHS_08400  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KPHS_09950  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KPHS_15720  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
KPHS_15710  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
KPHS_15660  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KPHS_15680  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KPHS_15640  hypothetical protein [KO:K00241]
KPHS_15650  succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
KPHS_04000  fumarate reductase [KO:K00244] [EC:1.3.5.1]
KPHS_03990  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
KPHS_03980  fumarate reductase, cytochrome b subunit [KO:K00246]
KPHS_03970  fumarate reductase subunit D [KO:K00247]
KPHS_24530  fumarase B (fumarate hydratase class I), anaerobic isozyme [KO:K01676] [EC:4.2.1.2]
KPHS_24200  fumarase A (fumarate hydratase class I), aerobic isozyme [KO:K01676] [EC:4.2.1.2]
KPHS_24210  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KPHS_31150  hypothetical protein [KO:K01675] [EC:4.2.1.2]
KPHS_47750  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KPHS_36940  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KPHS_24630  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KPHS_32890  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KPHS_49250  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KPHS_08380  pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
KPHS_08390  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
KPHS_09960  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
KPHS_23530  putative oxidoreductase, Fe-S subunit [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kpm00010  Glycolysis / Gluconeogenesis
kpm00053  Ascorbate and aldarate metabolism
kpm00061  Fatty acid biosynthesis
kpm00071  Fatty acid degradation
kpm00190  Oxidative phosphorylation
kpm00220  Arginine biosynthesis
kpm00250  Alanine, aspartate and glutamate metabolism
kpm00280  Valine, leucine and isoleucine degradation
kpm00350  Tyrosine metabolism
kpm00470  D-Amino acid metabolism
kpm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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