KEGG   PATHWAY: kps00020
Entry
kps00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella pneumoniae 30684/NJST258_2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kps00020  Citrate cycle (TCA cycle)
kps00020

Module
kps_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kps00020]
kps_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kps00020]
kps_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kps00020]
kps_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kps00020]
kps_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kps00020]
Other DBs
GO: 0006099
Organism
Klebsiella pneumoniae 30684/NJST258_2 [GN:kps]
Gene
KPNJ2_03840  Citrate synthase [KO:K01647] [EC:2.3.3.1]
KPNJ2_04148  Citrate synthase [KO:K01647] [EC:2.3.3.1]
KPNJ2_03219  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KPNJ2_04558  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KPNJ2_03379  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
KPNJ2_03834  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KPNJ2_03833  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
KPNJ2_04404  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KPNJ2_04564  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KPNJ2_03831  Succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
KPNJ2_03832  Succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
KPNJ2_03837  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KPNJ2_03836  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
KPNJ2_03839  Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
KPNJ2_03838  Succinate dehydrogenase membrane anchor subunit [KO:K00242]
KPNJ2_05022  Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
KPNJ2_05023  Fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
KPNJ2_05024  Fumarate reductase, 15 kDa hydrophobic protein [KO:K00246]
KPNJ2_05025  Fumarate reductase, 13 kDa hydrophobic protein [KO:K00247]
KPNJ2_02974  Fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KPNJ2_02935  hypothetical protein [KO:K01676] [EC:4.2.1.2]
KPNJ2_02973  Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KPNJ2_02291  Hypothetical protein [KO:K01675] [EC:4.2.1.2]
KPNJ2_00554  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KPNJ2_01692  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KPNJ2_02925  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KPNJ2_00362  Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
KPNJ2_02109  Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
KPNJ2_04566  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
KPNJ2_04403  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
KPNJ2_04565  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
KPNJ2_03045  Pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent) [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kps00010  Glycolysis / Gluconeogenesis
kps00053  Ascorbate and aldarate metabolism
kps00061  Fatty acid biosynthesis
kps00071  Fatty acid degradation
kps00190  Oxidative phosphorylation
kps00220  Arginine biosynthesis
kps00250  Alanine, aspartate and glutamate metabolism
kps00280  Valine, leucine and isoleucine degradation
kps00350  Tyrosine metabolism
kps00470  D-Amino acid metabolism
kps00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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