KEGG   PATHWAY: kpse00020
Entry
kpse00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Kosakonia pseudosacchari
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kpse00020  Citrate cycle (TCA cycle)
kpse00020

Module
kpse_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kpse00020]
kpse_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kpse00020]
kpse_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kpse00020]
kpse_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kpse00020]
kpse_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kpse00020]
Other DBs
GO: 0006099
Organism
Kosakonia pseudosacchari [GN:kpse]
Gene
IP581_06695  citrate synthase [KO:K01647] [EC:2.3.3.1]
IP581_12155  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
IP581_03885  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
IP581_09170  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IP581_09505  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IP581_06720  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
IP581_06725  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
IP581_03870  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IP581_06735  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IP581_06730  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IP581_06710  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IP581_06715  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IP581_06700  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
IP581_06705  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
IP581_02055  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
IP581_02050  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
IP581_02045  frdC; fumarate reductase subunit FrdC [KO:K00246]
IP581_02040  frdD; fumarate reductase subunit FrdD [KO:K00247]
IP581_10355  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
IP581_12980  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
IP581_10360  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IP581_09900  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
IP581_20765  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IP581_15380  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
IP581_12945  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
IP581_21525  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
IP581_03860  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
IP581_03865  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
IP581_10930  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
IP581_11930  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kpse00010  Glycolysis / Gluconeogenesis
kpse00053  Ascorbate and aldarate metabolism
kpse00061  Fatty acid biosynthesis
kpse00071  Fatty acid degradation
kpse00190  Oxidative phosphorylation
kpse00220  Arginine biosynthesis
kpse00250  Alanine, aspartate and glutamate metabolism
kpse00280  Valine, leucine and isoleucine degradation
kpse00350  Tyrosine metabolism
kpse00470  D-Amino acid metabolism
kpse00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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