KEGG   PATHWAY: kpv00020
Entry
kpv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella pneumoniae subsp. pneumoniae KPNIH29
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kpv00020  Citrate cycle (TCA cycle)
kpv00020

Module
kpv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kpv00020]
kpv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kpv00020]
kpv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kpv00020]
kpv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kpv00020]
kpv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kpv00020]
Other DBs
GO: 0006099
Organism
Klebsiella pneumoniae subsp. pneumoniae KPNIH29 [GN:kpv]
Gene
KPNIH29_06690  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
KPNIH29_08010  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
KPNIH29_11095  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KPNIH29_04465  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KPNIH29_10120  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KPNIH29_08035  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
KPNIH29_08040  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
KPNIH29_04440  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KPNIH29_08050  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
KPNIH29_08045  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
KPNIH29_08025  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
KPNIH29_08030  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
KPNIH29_08015  sdhC; succinate dehydrogenase [KO:K00241]
KPNIH29_08020  sdhD; succinate dehydrogenase [KO:K00242]
KPNIH29_02150  fumarate reductase [KO:K00244] [EC:1.3.5.1]
KPNIH29_02145  fumarate reductase [KO:K00245] [EC:1.3.5.1]
KPNIH29_02140  fumarate reductase [KO:K00246]
KPNIH29_02135  fumarate reductase [KO:K00247]
KPNIH29_12440  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KPNIH29_12020  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KPNIH29_12025  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KPNIH29_15575  hypothetical protein [KO:K01675] [EC:4.2.1.2]
KPNIH29_23725  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KPNIH29_12485  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KPNIH29_18430  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KPNIH29_16375  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KPNIH29_24385  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KPNIH29_04430  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
KPNIH29_04435  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
KPNIH29_17520  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
KPNIH29_11655  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kpv00010  Glycolysis / Gluconeogenesis
kpv00053  Ascorbate and aldarate metabolism
kpv00061  Fatty acid biosynthesis
kpv00071  Fatty acid degradation
kpv00190  Oxidative phosphorylation
kpv00220  Arginine biosynthesis
kpv00250  Alanine, aspartate and glutamate metabolism
kpv00280  Valine, leucine and isoleucine degradation
kpv00350  Tyrosine metabolism
kpv00470  D-Amino acid metabolism
kpv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system