KEGG   PATHWAY: kpz00020
Entry
kpz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella pneumoniae subsp. pneumoniae KPNIH27
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kpz00020  Citrate cycle (TCA cycle)
kpz00020

Module
kpz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kpz00020]
kpz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kpz00020]
kpz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kpz00020]
kpz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kpz00020]
kpz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kpz00020]
Other DBs
GO: 0006099
Organism
Klebsiella pneumoniae subsp. pneumoniae KPNIH27 [GN:kpz]
Gene
KPNIH27_06040  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
KPNIH27_07310  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
KPNIH27_10575  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
KPNIH27_04085  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KPNIH27_09585  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KPNIH27_07335  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
KPNIH27_07340  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
KPNIH27_04800  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KPNIH27_04065  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KPNIH27_07350  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
KPNIH27_07345  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
KPNIH27_07325  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
KPNIH27_07330  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
KPNIH27_07315  sdhC; succinate dehydrogenase [KO:K00241]
KPNIH27_07320  sdhD; succinate dehydrogenase [KO:K00242]
KPNIH27_02035  fumarate reductase [KO:K00244] [EC:1.3.5.1]
KPNIH27_02030  fumarate reductase [KO:K00245] [EC:1.3.5.1]
KPNIH27_02025  fumarate reductase [KO:K00246]
KPNIH27_02020  fumarate reductase [KO:K00247]
KPNIH27_11790  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KPNIH27_11940  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KPNIH27_11795  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KPNIH27_14915  hypothetical protein [KO:K01675] [EC:4.2.1.2]
KPNIH27_22815  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KPNIH27_17655  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KPNIH27_11980  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KPNIH27_15925  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KPNIH27_23465  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KPNIH27_04055  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
KPNIH27_04805  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
KPNIH27_04060  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
KPNIH27_11370  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kpz00010  Glycolysis / Gluconeogenesis
kpz00053  Ascorbate and aldarate metabolism
kpz00061  Fatty acid biosynthesis
kpz00071  Fatty acid degradation
kpz00190  Oxidative phosphorylation
kpz00220  Arginine biosynthesis
kpz00250  Alanine, aspartate and glutamate metabolism
kpz00280  Valine, leucine and isoleucine degradation
kpz00350  Tyrosine metabolism
kpz00470  D-Amino acid metabolism
kpz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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