KEGG   PATHWAY: kvd00020
Entry
kvd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella variicola DX120E
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kvd00020  Citrate cycle (TCA cycle)
kvd00020

Module
kvd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kvd00020]
kvd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kvd00020]
kvd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kvd00020]
kvd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kvd00020]
kvd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kvd00020]
Other DBs
GO: 0006099
Organism
Klebsiella variicola DX120E [GN:kvd]
Gene
KR75_14275  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KR75_15585  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KR75_18945  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
KR75_12410  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KR75_17855  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KR75_15610  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KR75_15615  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
KR75_12390  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KR75_13125  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KR75_15625  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KR75_15620  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KR75_15600  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KR75_15605  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KR75_15590  sdhC; succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
KR75_15595  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KR75_10280  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
KR75_10275  fumarate reductase [KO:K00245] [EC:1.3.5.1]
KR75_10270  fumarate reductase subunit C [KO:K00246]
KR75_10265  fumarate reductase [KO:K00247]
KR75_20105  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KR75_19950  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KR75_19955  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
KR75_23635  hypothetical protein [KO:K01675] [EC:4.2.1.2]
KR75_05760  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KR75_00665  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KR75_20140  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KR75_24675  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KR75_06415  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KR75_12380  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KR75_12385  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
KR75_13130  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
KR75_26115  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
KR75_19550  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kvd00010  Glycolysis / Gluconeogenesis
kvd00053  Ascorbate and aldarate metabolism
kvd00061  Fatty acid biosynthesis
kvd00071  Fatty acid degradation
kvd00190  Oxidative phosphorylation
kvd00220  Arginine biosynthesis
kvd00250  Alanine, aspartate and glutamate metabolism
kvd00280  Valine, leucine and isoleucine degradation
kvd00350  Tyrosine metabolism
kvd00470  D-Amino acid metabolism
kvd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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