KEGG   PATHWAY: kvq00020
Entry
kvq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella variicola DSM 15968
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kvq00020  Citrate cycle (TCA cycle)
kvq00020

Module
kvq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kvq00020]
kvq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kvq00020]
kvq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kvq00020]
kvq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kvq00020]
kvq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kvq00020]
Other DBs
GO: 0006099
Organism
Klebsiella variicola DSM 15968 [GN:kvq]
Gene
SP68_22200  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
SP68_20930  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
SP68_25390  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
SP68_19085  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SP68_24265  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SP68_22225  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SP68_22230  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SP68_19795  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SP68_19065  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SP68_22240  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
SP68_22235  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SP68_22215  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SP68_22220  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SP68_22205  sdhC; succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
SP68_22210  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
SP68_16870  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
SP68_16865  fumarate reductase [KO:K00245] [EC:1.3.5.1]
SP68_16860  fumarate reductase subunit C [KO:K00246]
SP68_16855  fumarate reductase [KO:K00247]
SP68_00985  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
SP68_01140  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
SP68_00990  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
SP68_04290  hypothetical protein [KO:K01675] [EC:4.2.1.2]
SP68_12375  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SP68_01175  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SP68_07200  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SP68_13010  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SP68_05035  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SP68_19055  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
SP68_19800  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
SP68_19060  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
SP68_00590  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
SP68_06260  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kvq00010  Glycolysis / Gluconeogenesis
kvq00053  Ascorbate and aldarate metabolism
kvq00061  Fatty acid biosynthesis
kvq00071  Fatty acid degradation
kvq00190  Oxidative phosphorylation
kvq00220  Arginine biosynthesis
kvq00250  Alanine, aspartate and glutamate metabolism
kvq00280  Valine, leucine and isoleucine degradation
kvq00350  Tyrosine metabolism
kvq00470  D-Amino acid metabolism
kvq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system