PATHWAY: lab00470
Help
Entry
lab00470 Pathway
Name
D-Amino acid metabolism - Lysobacter antibioticus 76
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
lab00470
D-Amino acid metabolism
Ortholog table
Module
lab_M00948
Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:
lab00470
]
Other DBs
GO:
0046416
Organism
Lysobacter antibioticus 76 [GN:
lab
]
Gene
LA76x_2580
alr; alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
LA76x_1176
ddl; D-alanine--D-alanine ligase [KO:
K01921
] [EC:
6.3.2.4
]
LA76x_0057
putative aspartate/glutamate racemase [KO:
K25316
] [EC:
5.1.1.10
]
LA76x_0882
glsA; glutaminase A [KO:
K01425
] [EC:
3.5.1.2
]
LA76x_0744
ykfB; L-Ala-D/L-Glu epimerase [KO:
K19802
] [EC:
5.1.1.20
5.1.1.25
]
LA76x_1428
aspartate racemase family protein [KO:
K01779
] [EC:
5.1.1.13
]
LA76x_0725
putative D-serine deaminase (D-serine dehydratase) protein [KO:
K01753
] [EC:
4.3.1.18
]
LA76x_0810
dapF; diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
LA76x_1650
aspartate kinase domain protein [KO:
K12526
] [EC:
4.1.1.20
2.7.2.4
]
LA76x_0733
4-hydroxyproline epimerase [KO:
K12658
] [EC:
5.1.1.8
]
LA76x_0736
FAD binding domain protein [KO:
K22549
] [EC:1.5.99.-]
LA76x_0734
FAD binding domain protein [KO:
K21061
] [EC:1.5.99.-]
LA76x_0735
2Fe-2S iron-sulfur cluster binding domain protein [KO:
K22550
]
LA76x_0737
dihydrodipicolinate synthetase family protein [KO:
K21062
] [EC:
3.5.4.22
]
LA76x_0738
aldehyde dehydrogenase family protein [KO:
K13877
] [EC:
1.2.1.26
]
LA76x_3718
FAD binding domain protein [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
lab00010
Glycolysis / Gluconeogenesis
lab00020
Citrate cycle (TCA cycle)
lab00250
Alanine, aspartate and glutamate metabolism
lab00260
Glycine, serine and threonine metabolism
lab00270
Cysteine and methionine metabolism
lab00300
Lysine biosynthesis
lab00310
Lysine degradation
lab00330
Arginine and proline metabolism
lab00340
Histidine metabolism
lab00360
Phenylalanine metabolism
lab00550
Peptidoglycan biosynthesis
lab00620
Pyruvate metabolism
KO pathway
ko00470
LinkDB
All DBs
DBGET
integrated database retrieval system
