KEGG   PATHWAY: lag00020
Entry
lag00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio anguillarum M3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lag00020  Citrate cycle (TCA cycle)
lag00020

Module
lag_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lag00020]
lag_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lag00020]
lag_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lag00020]
lag_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lag00020]
lag_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lag00020]
Other DBs
GO: 0006099
Organism
Vibrio anguillarum M3 [GN:lag]
Gene
N175_05520  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
N175_12630  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
N175_09490  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
N175_05545  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
N175_05550  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
N175_02790  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
N175_12720  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
N175_05560  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
N175_05555  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
N175_05535  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
N175_05540  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
N175_05525  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
N175_05530  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
N175_02725  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
N175_02720  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
N175_02715  fumarate reductase [KO:K00246]
N175_02710  fumarate reductase [KO:K00247]
N175_07835  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
N175_13760  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
N175_00260  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
N175_12730  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
N175_12725  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lag00010  Glycolysis / Gluconeogenesis
lag00053  Ascorbate and aldarate metabolism
lag00061  Fatty acid biosynthesis
lag00071  Fatty acid degradation
lag00190  Oxidative phosphorylation
lag00220  Arginine biosynthesis
lag00250  Alanine, aspartate and glutamate metabolism
lag00280  Valine, leucine and isoleucine degradation
lag00350  Tyrosine metabolism
lag00470  D-Amino acid metabolism
lag00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system