KEGG   PATHWAY: lal00020
Entry
lal00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lacimicrobium alkaliphilum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lal00020  Citrate cycle (TCA cycle)
lal00020

Module
lal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lal00020]
lal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lal00020]
lal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lal00020]
lal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lal00020]
lal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lal00020]
Other DBs
GO: 0006099
Organism
Lacimicrobium alkaliphilum [GN:lal]
Gene
AT746_08565  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AT746_15245  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AT746_16000  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AT746_10265  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AT746_05275  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
AT746_08590  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AT746_08595  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
AT746_16075  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AT746_08605  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AT746_08600  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AT746_08580  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AT746_08585  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AT746_08570  succinate dehydrogenase [KO:K00241]
AT746_08575  sdhD; succinate dehydrogenase [KO:K00242]
AT746_11250  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AT746_15250  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AT746_03715  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AT746_18415  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AT746_16085  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AT746_16080  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lal00010  Glycolysis / Gluconeogenesis
lal00053  Ascorbate and aldarate metabolism
lal00061  Fatty acid biosynthesis
lal00071  Fatty acid degradation
lal00190  Oxidative phosphorylation
lal00220  Arginine biosynthesis
lal00250  Alanine, aspartate and glutamate metabolism
lal00280  Valine, leucine and isoleucine degradation
lal00350  Tyrosine metabolism
lal00470  D-Amino acid metabolism
lal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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