KEGG   PATHWAY: lap00020
Entry
lap00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Labrenzia sp. CP4
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lap00020  Citrate cycle (TCA cycle)
lap00020

Module
lap_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lap00020]
lap_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lap00020]
lap_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lap00020]
lap_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lap00020]
lap_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lap00020]
Other DBs
GO: 0006099
Organism
Labrenzia sp. CP4 [GN:lap]
Gene
ACP90_00215  citrate synthase [KO:K01647] [EC:2.3.3.1]
ACP90_00220  citrate synthase [KO:K01647] [EC:2.3.3.1]
ACP90_13920  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
ACP90_02310  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ACP90_02315  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ACP90_10870  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ACP90_10945  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ACP90_25630  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
ACP90_25625  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
ACP90_25605  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACP90_14370  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACP90_25635  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
ACP90_25645  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ACP90_25745  fumarate reductase [KO:K00239] [EC:1.3.5.1]
ACP90_25735  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ACP90_25755  succinate dehydrogenase [KO:K00241]
ACP90_25750  succinate dehydrogenase [KO:K00242]
ACP90_16245  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ACP90_13955  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ACP90_25650  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ACP90_01645  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ACP90_25485  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
ACP90_18755  transketolase [KO:K00163] [EC:1.2.4.1]
ACP90_14355  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
ACP90_14360  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
ACP90_14365  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lap00010  Glycolysis / Gluconeogenesis
lap00053  Ascorbate and aldarate metabolism
lap00061  Fatty acid biosynthesis
lap00071  Fatty acid degradation
lap00190  Oxidative phosphorylation
lap00220  Arginine biosynthesis
lap00250  Alanine, aspartate and glutamate metabolism
lap00280  Valine, leucine and isoleucine degradation
lap00350  Tyrosine metabolism
lap00470  D-Amino acid metabolism
lap00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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