KEGG   PATHWAY: lat00020
Entry
lat00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Liberibacter asiaticus Ishi-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lat00020  Citrate cycle (TCA cycle)
lat00020

Module
lat_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lat00020]
lat_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lat00020]
lat_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lat00020]
lat_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lat00020]
Other DBs
GO: 0006099
Organism
Candidatus Liberibacter asiaticus Ishi-1 [GN:lat]
Gene
CGUJ_01200  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
CGUJ_01680  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CGUJ_04005  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CGUJ_04765  kgd; alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
CGUJ_04770  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CGUJ_04775  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGUJ_02810  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGUJ_04760  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CGUJ_04755  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
CGUJ_04725  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CGUJ_04730  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CGUJ_04715  sdhC; succinate dehydrogenase protein, cytochrome b subunit [KO:K00241]
CGUJ_04720  sdhD; succinate dehydrogenase hydrophobic membrane anchor [KO:K00242]
CGUJ_00375  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CGUJ_04750  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CGUJ_03595  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CGUJ_02795  dehydrogenase, E1 component [KO:K00161] [EC:1.2.4.1]
CGUJ_02800  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CGUJ_02805  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lat00010  Glycolysis / Gluconeogenesis
lat00061  Fatty acid biosynthesis
lat00190  Oxidative phosphorylation
lat00220  Arginine biosynthesis
lat00250  Alanine, aspartate and glutamate metabolism
lat00280  Valine, leucine and isoleucine degradation
lat00470  D-Amino acid metabolism
lat00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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