KEGG   PATHWAY: lax00020
Entry
lax00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leclercia adecarboxylata
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lax00020  Citrate cycle (TCA cycle)
lax00020

Module
lax_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lax00020]
lax_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lax00020]
lax_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lax00020]
lax_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lax00020]
lax_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lax00020]
Other DBs
GO: 0006099
Organism
Leclercia adecarboxylata [GN:lax]
Gene
APT61_16130  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
APT61_09565  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
APT61_18465  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
APT61_13780  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
APT61_16105  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
APT61_16100  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
APT61_18480  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
APT61_16090  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
APT61_16095  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
APT61_16115  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
APT61_16110  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
APT61_16125  sdhC; succinate dehydrogenase [KO:K00241]
APT61_16120  sdhD; succinate dehydrogenase [KO:K00242]
APT61_20425  fumarate reductase [KO:K00244] [EC:1.3.5.1]
APT61_20430  fumarate reductase [KO:K00245] [EC:1.3.5.1]
APT61_20435  fumarate reductase [KO:K00246]
APT61_20440  fumarate reductase [KO:K00247]
APT61_12190  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
APT61_12185  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
APT61_12850  hypothetical protein [KO:K01675] [EC:4.2.1.2]
APT61_02480  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
APT61_07055  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
APT61_01745  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
APT61_18490  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
APT61_18485  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
APT61_09965  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lax00010  Glycolysis / Gluconeogenesis
lax00053  Ascorbate and aldarate metabolism
lax00061  Fatty acid biosynthesis
lax00071  Fatty acid degradation
lax00190  Oxidative phosphorylation
lax00220  Arginine biosynthesis
lax00250  Alanine, aspartate and glutamate metabolism
lax00280  Valine, leucine and isoleucine degradation
lax00350  Tyrosine metabolism
lax00470  D-Amino acid metabolism
lax00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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